# Tools for the provision of scientific fisheries management advice

## Documentation for package ‘kobe’ version 1.3.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

kobe-package | Tools for provide scientific fisheries advice
assmt | Example Datasets
dRate | dRate
hinge | incr
iav | iav
incr | incr
kobe | ~~ Methods for Function 'kobe' in Package 'kobe' ~~
kobe-method | ~~ Methods for Function 'kobe' in Package 'kobe' ~~
kobe2box | Reads pro2box projection results and returns stock and harvest rate relative to MSY reference points or proxies.
kobeAspic | Reads ASPIC bootstraps and projections and returns stock and harvest rate relative to MSY reference points
kobeDens | kobeDens
kobeFreq | kobeFreq
kobeInterp | Methods to generate the Kobe II Strategy Matrix.
kobeInterp-method | Methods to generate the Kobe II Strategy Matrix.
kobeInterp-methods | Methods to generate the Kobe II Strategy Matrix.
kobeMFCL | Reads Multifan-CL assessment results and returns stock and harvest rate relative to MSY reference points
kobeP | Calculates whether each point corresponds to being over-fished or subject to over-fishing and being in the red, green or yellow regions of the kobe phase plots quadrants.
kobeP-methods | Calculates whether each point corresponds to being over-fished or subject to over-fishing and being in the red, green or yellow regions of the kobe phase plots quadrants.
kobePhase | kobePhase
kobePhase-method | kobePhase
kobePhaseMar | Kobe Phase Plot with Marginal Densities
kobeProb | kobeProb
kobeShade | Shades matrix depending on value of elements
kobeShade-method | Shades matrix depending on value of elements
kobeShade-methods | Shades matrix depending on value of elements
kobeSmry | Creates Summaries i.e. probability of being in the green quadrant
kobeSmry-method | Creates Summaries i.e. probability of being in the green quadrant
kobeSS | Reads SS assessment results and returns stock and harvest rate relative to MSY reference points
kobeSS3 | Reads SS3 results and returns stock and harvest rate relative to MSY reference points
kobeTrks | Creates tracks for plotting on phase plot
kobeTrks-method | Creates tracks for plotting on phase plot
multiplot | Calculates confidence intervals for different probabiity levels for pairs of data points.
prj | Example Datasets
prj1 | Example Datasets
recovered | recovered
sims | Example Datasets
theme_ms | ggplot2 theme