block.bounds            Creates a vector of haplotype block boundary
                        basepair positions.
block.cood              Vector of Haplotype Block Boundaries
block.map.matrix        Creates an indicator matrix for haplotype block
                        boundaries, for use in ld_lasso.
block.obj               GenABEL Object with Genotype and Phenotype Data
chi2                    Creates a vector of chi-squared values from the
                        allelic test of association
get.cp                  Uses bootstrap sampling over a vector of LD
                        LASSO constraint parameters, s2, to compute a
                        vector of cp estimates.
get.s1                  Finds an estimate for s1 based on an estimate
                        of the expected false positive rate.  This
                        function is a wrapper for p0tos1.
heatmap                 Plots the heat map for the LD LASSO solution
                        space
ld_lasso                The main function of the LD LASSO method
ld_lasso_method         The LD LASSO function
ldlasso-package         LD LASSO for Case Control Genetic Association
                        Study
ldlasso.obj             LD LASSO Object created by the function
                        ld_lasso_method
p0tos1                  Finds the LASSO parameter s1 that corresponds
                        to desired false positive rate
plot_beta               Plot the LD LASSO solution by physical
                        position.
plot_ldlasso            Diagnostic plot for an ldlasso object
r2.cut.fn               Find the r-squared cutoff
trace.plot              Creates a trace plot for the LD LASSO
