# Tools to Evaluate DNA Profile Evidence

## Documentation for package ‘likeLTD’ version 6.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.

## Help Pages

allele.report | likeLTD::allele.report
allele.report.peaks | likeLTD::allele.report.peaks
compatible.genotypes | likeLTD::compatible.genotypes
create.likelihood | likeLTD::create.likelihood
create.likelihood.log | likeLTD::create.likelihood.log
create.likelihood.vectors | likeLTD::create.likelihood.vectors
create.likelihood.vectors.peaks | likeLTD::create.likelihood.vectors.peaks
CSP.heights.plot | likeLTD::CSP.heights.plot
defence.hypothesis | likeLTD::defence.hypothesis
defence.hypothesis.peaks | likeLTD::defence.hypothesis.peaks
DEoptimLoop | likeLTD::DEoptimLoop
determine.dropout | determine.dropout
DNA17-db | NGMSelect allele database
evaluate | likeLTD::evaluate
evaluate.from.interim | likeLTD::evaluate.from.interim
evaluate.from.interim.peaks | likeLTD::evaluate.from.interim.peaks
evaluate.peaks | likeLTD::evaluate.peaks
get.likely.genotypes | likeLTD::get.likely.genotypes
get.likely.genotypes.peaks | likeLTD::get.likely.genotypes.peaks
Identifiler-db | Identifiler allele database
initial.arguments | likeLTD::initial.arguments
lgc-allele-freqs-wbp | Allele database
likeLTD | likeLTD
linkage | Recombination rates for linked loci
load.allele.database | likeLTD::load.allele.database
locus.likes | likeLTD::locus.likes
locus.likes.peaks | likeLTD::locus.likes.peaks
objective.function | likeLTD objective functions
optimisation.params | likeLTD::optimisation.params
optimisation.params.peaks | likeLTD::optimisation.params.peaks
output.report | likeLTD::output.report
output.report.peaks | likeLTD::output.report.peaks
pack.admin.input | likeLTD::pack.admin.input
pack.admin.input.peaks | likeLTD::pack.admin.input.peaks
peaks.results.plot | likeLTD::peaks.results.plot
penalties | likeLTD::penalties
plotLikelihood.2d | likeLTD::plotLikelihood.2d
prosecution.hypothesis | likeLTD::prosecution.hypothesis
prosecution.hypothesis.peaks | likeLTD::prosecution.hypothesis.peaks
read.csp.profile | likeLTD::read.csp.profile
read.known.profiles | likeLTD::read.known.profiles
read.peaks.profile | likeLTD::read.peaks.profile
read.unc.profile | likeLTD::read.unc.profile
relistArguments | likeLTD::relistArguments
relistArguments.peaks | likeLTD::relistArguments.peaks
SGMplus-db | SGMplus allele database
unitTests.likeLTD | Unit tests for the package likeLTD