rplant-package	rplant-package
appINFO	rPlant-internal
Check	rPlant-internal
CheckJobStatus	SubmitJob
Clustal	ClustalW
clustal	ClustalW
ClustalW	ClustalW
CompareNames	TNRS
CopyDir	ListDir
CopyFile	UploadFile
DeleteDir	ListDir
DeleteFile	UploadFile
DeleteJob	SubmitJob
DNA.fasta	rPlant-data
Error	rPlant-internal
fasta_aa.aln	rPlant-data
fasta_dna.aln	rPlant-data
FastTree	Fasttree
Fasttree	Fasttree
fasttree	Fasttree
FaST_LMM	FaST_LMM
find.input	rPlant-internal
geno_test.tfam	rPlant-data
geno_test.tped	rPlant-data
GetAppInfo	GetAppList
GetJobHistory	SubmitJob
GetPhylotasticToken	TNRS
KillJob	SubmitJob
ListApps	GetAppList
ListDir	ListDir
ListJobOutput	SubmitJob
Mafft	Mafft
MakeDir	ListDir
MoveDir	ListDir
MoveFile	UploadFile
Muscle	Muscle
PermissionsDir	ListDir
PermissionsFile	UploadFile
phylip_interleaved_aa.aln	rPlant-data
phylip_interleaved_dna.aln	rPlant-data
PLINK	PLINK
PLINKConversion	PLINKConversion
PROTEIN.fasta	rPlant-data
RAXML	RAxML
RAxML	RAxML
Raxml	RAxML
raxml	RAxML
RenameDir	ListDir
RenameFile	UploadFile
Renew	rPlant-internal
RenewToken	rPlant-internal
ResolveNames	TNRS
RetrieveJob	SubmitJob
RetrieveTNRSNames	TNRS
rPlant	rplant-package
rplant	rplant-package
rplant.env	rPlant-internal
ShareDir	ListDir
ShareFile	UploadFile
simulation1.map	rPlant-data
simulation1.ped	rPlant-data
SubmitJob	SubmitJob
SupportFile	UploadFile
TestApp	rPlant-internal
Time	rPlant-internal
TNRS	TNRS
UploadFile	UploadFile
Validate	Validate
Wait	SubmitJob
