Bonferroni.alpha        Calculates individual significance level to be
                        used to achieve a global alpha (with
                        Bonferroni)
add.marker              Creates a new sequence by adding markers.
combine.onemap          Combine OneMap datasets
compare                 Compare all possible orders (exhaustive search)
                        for a given sequence of markers
create.data.bins        New dataset based on bins
create.dataframe.for.plot.outcross
                        Create a dataframe suitable for a ggplot2
                        graphic
draw.map                Draw a genetic map
drop.marker             Creates a new sequence by dropping markers.
example.out             Data from a full-sib family derived from two
                        outbred parents
find.bins               Allocate markers into bins
group                   Assign markers to linkage groups
make.seq                Create a sequence of markers
map                     Construct the linkage map for a sequence of
                        markers
map.overlapping.batches
                        Mapping overlapping batches
map_func                Mapping functions Haldane and Kosambi
marker.type             Informs the segregation patterns of markers
order.seq               Search for the best order of markers combining
                        compare and try.seq functions
pick.batch.sizes        Picking optimal batch size values
plot.by.segreg.type     Draw a graphic showing the number of markers of
                        each segregation pattern.
plot.onemap             Draw a graphic of raw data for any OneMap
                        population
plot.onemap.segreg.test
                        Plot p-values for chi-square tests of expected
                        segregation
print.group             Print group result
print.onemap.segreg.test
                        Print segregation test result
print.outcross          Print read.outcross result
print.rf.2pts           Print twopoint test result
print.try               Print try.seq result
pseudo.testcross.split
                        Split a dataset into parent-specific subsets
rcd                     Rapid Chain Delineation
read.mapmaker           Read data from a Mapmaker raw file
read.onemap             Read data from all types of progenies supported
                        by OneMap
read.outcross           Read data from a full-sib progeny (outcrossing
                        populations)
read.outcross2          Read data from a full-sib progeny (outcrossing
                        populations)
record                  Recombination Counting and Ordering
record.parallel         Recombination Counting and Ordering
rf.2pts                 Two-point analysis between genetic markers
ripple.ord              Update linkage map with alternative orders at
                        all positions
ripple.seq              Compares and displays plausible alternative
                        orders for a given linkage group
ripple.window           Update linkage map with alternative orders at a
                        given position
seeded.map              Construct the linkage map for a sequence of
                        markers after seeding phases
select.segreg           Show markers with/without segregation
                        distortion
seriation               Seriation
set.map.fun             Defines the default mapping function
suggest.lod             Suggests a LOD Score for two point tests
test.segregation        test.segregation
test.segregation.of.a.marker
                        test.segregation.of.a.marker
try.seq                 Try to map a marker into every possible
                        position between markers in a given map
ug                      Unidirectional Growth
write.map               Write a genetic map to a file
