# Dynamical Systems Approach to Infectious Disease Epidemiology

## Documentation for package ‘DSAIDE’ version 0.6.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

DSAIDE-package | DSAIDE: A package to learn about Dynamical Systems Approaches to Infectious Disease Epidemiology
DSAIDE | DSAIDE: A package to learn about Dynamical Systems Approaches to Infectious Disease Epidemiology
dsaidemenu | The main menu for the DSAIDE package
generate_instruction_tabs | A helper function for the UI part of the shiny apps
generate_simoutput | A helper function that takes result from the simulators and produces plots and text output
simulate_directtransmission | Simulation of a compartmental infectious disease transmission model illustrating different types of direct transmission
simulate_environmentaltransmission | Simulation of a compartmental infectious disease transmission model illustrating environmental transmission
simulate_evolution | Stochastic simulation of a compartmental SIR-type model with wild-type and mutant strains and treatment
simulate_heterogeneity | Simulation of a compartmental infectious disease transmission model with 2 types of hosts
simulate_idcharacteristics | Simulation of an infectious disease transmission model with multiple compartments
simulate_idcontrol | Simulation of a compartmental infectious disease transmission model including different control mechanisms
simulate_idpatterns | Simulation of a compartmental infectious disease transmission model including seasonality
simulate_introduction | Simulation of a basic SIR model illustrating a single infectious disease outbreak
simulate_multipathogen | Simulation of a compartmental infectious disease transmission model with 2 types of pathogens
simulate_reproductivenumber | Simulation of a compartmental infectious disease transmission model to study the reproductive number
simulate_stochastic | Stochastic simulation of an SEIR-type model
simulate_vectortransmission | Simulation of a compartmental infectious disease transmission model illustrating vector-borne transmission