%$%	dollarpipe
%<>%	doublepipe
%>%	pipe
addContigProperty	addContigProperty
addKOProperty	addKOProperty
adjacentPairs	adjacentPairs
allTrios	allTrios
annotateContigs.taxonomy	annotateContigs.taxonomy
blatting	blatting
buildE	buildE
buildTree	buildTree
categorize	categorize
connect	connect
contigInfo	contigInfo
contigsSurvive.repeats.readNum	contigsSurvive.repeats.readNum
contigsSurvive.repeats.rpk	contigsSurvive.repeats.rpk
contractMetab	contractMetab
cpdname	cpdname
dbquery	dbquery
dynamicThreshold	dynamicThreshold
dynPlots	dynPlots
extractFromPath	extractFromPath
findHomology	findHomology
findK	findK
findNextKO	findNextKO
findPerl	findPerl
findPython	findPython
findSeeds	findSeeds
findTrios	findTrios
findtype	findtype
findV	findV
grep.cDNA	grep.cDNA
grepgraph	grepgraph
grepgraph.cpd	grepgraph.cpd
grepgraph_cpd	grepgraph_cpd
grepReads	grepReads
ig2ggplot	ig2ggplot
igraph2gexf	igraph2gexf
index	index
ko2path	ko2path
koname	koname
ksCal	ksCal
lca	lca
listquery	listquery
lookupTable	lookupTable
make.data.frame	make.data.frame
map	map
mapContig	mapContig
mappingInfo	mappingInfo
mapReads2MDR	mapReads2MDR
mdrRanges	mdrRanges
nitrogenMetab	nitrogenMetab
path2kingdom	path2kingdom
path2ko	path2ko
pathways	pathways
plotClassification	plotClassification
prettifyGraph	prettifyGraph
readStatusReader	readStatusReader
rolling	rolling
scg	scg
simpleThres	simpleThres
simulated	simulated
surrNODES	surrNODES
taxnam.sql	taxnam.sql
taxname	taxname
top500kos	top500kos
