Package: PlasmaMutationDetector
Type: Package
Title: Tumor Mutation Detection in Plasma
Version: 1.6.2
Date: 2017-11-08
Author: Yves Rozenholc, Nicolas Pécuchet, Pierre Laurent-Puig
Maintainer: Yves Rozenholc <yves.rozenholc@parisdescartes.fr>
Description: Aims at detecting single nucleotide variation
    (SNV) and insertion/deletion (INDEL) in circulating tumor DNA (ctDNA), used
    as a surrogate marker for tumor, at each base position of an Next Generation
    Sequencing (NGS) analysis. Mutations are assessed by comparing the minor-allele
    frequency at each position to the measured PER in control samples.
License: MIT + file LICENSE
Imports: S4Vectors (>= 0.8.7), Rsamtools (>= 1.22.0), rtracklayer (>=
        1.30.1), robustbase (>= 0.92-5), SummarizedExperiment (>=
        1.2.3)
Depends: R (>= 3.3.1), ggplot2 (>= 2.0.0), grid (>= 3.2.3),
        GenomicRanges (>= 1.22.3), VariantAnnotation (>= 1.16.4)
Encoding: UTF-8
RoxygenNote: 6.0.1
LazyData: true
NeedsCompilation: no
Packaged: 2017-11-15 13:05:35 UTC; rozen
Repository: CRAN
Date/Publication: 2017-11-15 13:30:36 UTC
Built: R 3.3.3; ; 2018-01-23 12:38:55 UTC; windows
