PICalc                  Compute the polymorphism infomration content
                        (PIC) of each locus in a Arlequin project file
                        (.arp)
PopGenKit-package       Useful functions for (batch) file conversion
                        and data resampling in microsatellite datasets
batchconvert            Convert all Genepop files in dir to Arlequin
                        format
batchconvertjack        Convert all Genepop files in dir to Arlequin
                        format while removing any subset of loci
batchjacklociArp        Remove a subset of loci from all Arlequin
                        project files (extension .arp) in dir
batchjacklociArpRANDOM
                        Remove a random subset of loci from all
                        Arlequin project files (extension .arp) in dir
batchrecodeBi           Transform all multi-allelic Arlequin datafiles
                        in dir to bi-allelic datafiles
bootstrapHet            Calculate confidence intervals on observed and
                        expected heterozygosity by bootstrapping
                        individuals in each population
bootstrapHet_byloc      Calculate confidence intervals on observed and
                        expected heterozygosity in each population by
                        bootstrapping markers
combineBsim             Combines real and simulated multilocus data
                        (from the software BottleSim) in new Genepop
                        files (one file per simulation replicate).
convert                 Convert a Genepop file to Arlequin format
convertjack             Convert a Genepop file to Arlequin format while
                        allowing the removal of any subset of loci from
                        the output
freqPCA                 Create a table of allele frequencies from
                        Arlequin file (.arp) that can be used directly
                        for ordination analyses (e.g. Principal
                        Component Analysis)
inputBottleSim          Create a BottleSim input file from a Genepop
                        (.gen) file.
jacklociArp             Remove a subset of loci from a Arlequin project
                        file (extension .arp)
jacklociArpRANDOM       Remove a random subset of loci from a Arlequin
                        project file (extension .arp)
jackmsat                An internal function used by 'jackmsatpop'.
                        Should not be used.
jackmsatpop             From a Genepop input file (.gen), it calculates
                        allele rarefaction curves within each
                        population for a given sampling interval.
outputBottleSim         Converts alleles from BottleSim simulation
                        results to real allele sizes as found in the
                        input file generated with the function
                        'inputBottleSim'
popgen                  Compute allele frequencies, population genetic
                        parameters, and pairwise Fst values from a
                        Arlequin (.arp) input file
recodeBi                Transform a multi-allelic Arlequin datafile to
                        a bi-allelic datafile
