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| REIDS-package | Random Effects for the Identification of Differential Splicing. |
| AnnotateGenes | "AnnotateGenes" |
| AnnotateGeneSymbol | "AnnotateGeneSymbol" |
| arcplot | Arc Diagram Plot |
| ASExons | "ASExons" |
| CreateOutput | "CreateOutput" |
| DataProcessing | DataProcessing |
| ExampleFirmaOutput | Example data set for FIRMA |
| ExonTesting | "ExonTesting" |
| ExpressionLevelPlot | "ExpressionLevelPlot" |
| FilterInformativeGenes | "FilterInformativeGenes" |
| FIRMAScores | "FIRMAScores" |
| GetIntensities | "GetIntensities" |
| iniREIDS | "iniREIDS" |
| JunInfo | JunInfo |
| node_coords | Node Coordinates |
| PivotTransformData | "PivotTransformation" |
| REIDS | Random Effects for the Identification of Differential Splicing. |
| REIDSFunction | "REIDSFunction" |
| REIDSFunction_ClusterVersion | "REIDS_ClusterVersion" |
| reidsfunction_genebygene | "reidsfunction_genebygene" |
| REIDSmodel_intern | "REIDSmodel_intern" |
| REIDS_JunctionAssesment | REIDS_JunctionAssessment |
| Search | "Search" |
| SpliceIndex | "SpliceIndex" |
| TC12000010 | Example data set |
| TC12000010_ExonLevel | Exon level data |
| TC12000010_GeneLevel | Gene level data |
| TC12000010_positions | Positions |
| TC12000010_REIDS_Output | REIDS Output |
| TC12000010_transcript.clusters | Transcript Clusters |
| TranscriptsPlot | "TranscriptsPlot " |
| trim | "trim" |
| xynodes | X or Y coordinates of node locations |