Bayesian Inference of Landscape Occupancy from Presence-Only Data

Documentation for package ‘bayesLopod’ version 1.0.1

Andropogon_shape	Number of detection of Andropogon gerardii and it's target group in several counties in the Midwest
LopodData-class	An S4 class to contain data to be input into a bayesLopod model.
LopodData_Class	An S4 class to contain data to be input into a bayesLopod model.
lopodDens	Kernel density estimates of global occupancy model parameters.
LopodModel	An S4 class containing a LopodModel.
LopodModel-class	An S4 class containing a LopodModel.
lopodRaster	Crate raster object for a parameter estimated in a LopodModel
lopodShape	Crate Shape object for a parameter estimated in a LopodModel
lopodSummary	Summary statistics for a LopodModel
lopodTrace	Plots the values of model parameters for each chain across iterations
modelLopod	Run a Bayes inference of Landscape Occupancy from Presence-Only Data on Stan
modelParams	Internal function to extract parameters from a StanModel object
rasterDistToRecords	Internal - Create a Stack with distance matrices to sampled and detected cells
rasterLopodData	Create a LopodData object from Raster data
rasterStudyArea	Internal - Create a Raster object with Study Area from Raster data
shapeLopodData	Create a LopodData object from Raster data
simSpRecords	Coordinates for detections of a simulated species
simSpSamplingEffort	Coordinates for sampling events targeting a simulated species
xyToRaster	Crate Shape object for a parameter estimated in a LopodModel