biomod2-package	biomod2-package
.Models.prepare.data	biomod2.inner-methods
.Models.prepare.data,BIOMOD.formated.data-method	biomod2.inner-methods
.Models.prepare.data,BIOMOD.formated.data.PA-method	biomod2.inner-methods
.Projection.do.proj	biomod2.inner-methods
.Projection.do.proj,ANY,data.frame-method	biomod2.inner-methods
.Projection.do.proj,ANY,RasterStack-method	biomod2.inner-methods
.transform.outputs	biomod2.inner-methods
.transform.outputs,array-method	biomod2.inner-methods
.transform.outputs,list-method	biomod2.inner-methods
ANN_biomod2_model	biomod2_model-class
ANN_biomod2_model-class	biomod2_model-class
array-method	BinaryTransformation-methods
BinaryTransformation	BinaryTransformation-methods
BinaryTransformation,	BinaryTransformation-methods
BinaryTransformation,array-method	BinaryTransformation-methods
BinaryTransformation,data.frame-method	BinaryTransformation-methods
BinaryTransformation,matrix-method	BinaryTransformation-methods
BinaryTransformation,numeric-method	BinaryTransformation-methods
BinaryTransformation,RasterBrick-method	BinaryTransformation-methods
BinaryTransformation,RasterLayer-method	BinaryTransformation-methods
BinaryTransformation,RasterStack-method	BinaryTransformation-methods
BIOMOD.EnsembleModeling.out	BIOMOD.EnsembleModeling.out-class
BIOMOD.EnsembleModeling.out-class	BIOMOD.EnsembleModeling.out-class
BIOMOD.formated.data	BIOMOD.formated.data-class
BIOMOD.formated.data,data.frame,ANY-method	BIOMOD.formated.data-class
BIOMOD.formated.data,numeric,data.frame-method	BIOMOD.formated.data-class
BIOMOD.formated.data,numeric,matrix-method	BIOMOD.formated.data-class
BIOMOD.formated.data,numeric,RasterStack-method	BIOMOD.formated.data-class
BIOMOD.formated.data-class	BIOMOD.formated.data-class
BIOMOD.formated.data.PA	BIOMOD.formated.data-class
BIOMOD.formated.data.PA-class	BIOMOD.formated.data-class
BIOMOD.Model.Options-class	BIOMOD.Model.Options-class
BIOMOD.models.out-class	BIOMOD.models.out-class
BIOMOD.projection.out	BIOMOD.projection.out-class
BIOMOD.projection.out-class	BIOMOD.projection.out-class
BIOMOD.stored.array	BIOMOD.stored.objects-class
BIOMOD.stored.array-class	BIOMOD.stored.objects-class
BIOMOD.stored.data	BIOMOD.stored.objects-class
BIOMOD.stored.data-class	BIOMOD.stored.objects-class
BIOMOD.stored.data.frame	BIOMOD.stored.objects-class
BIOMOD.stored.data.frame-class	BIOMOD.stored.objects-class
BIOMOD.stored.files	BIOMOD.stored.objects-class
BIOMOD.stored.files-class	BIOMOD.stored.objects-class
BIOMOD.stored.formated.data	BIOMOD.stored.objects-class
BIOMOD.stored.formated.data-class	BIOMOD.stored.objects-class
BIOMOD.stored.models.options	BIOMOD.stored.objects-class
BIOMOD.stored.models.options-class	BIOMOD.stored.objects-class
BIOMOD.stored.models.out	BIOMOD.stored.objects-class
BIOMOD.stored.models.out-class	BIOMOD.stored.objects-class
BIOMOD.stored.raster.stack	BIOMOD.stored.objects-class
BIOMOD.stored.raster.stack-class	BIOMOD.stored.objects-class
biomod2	biomod2-package
biomod2_ensemble_model	biomod2_model-class
biomod2_ensemble_model-class	biomod2_model-class
biomod2_model	biomod2_model-class
biomod2_model-class	biomod2_model-class
BIOMOD_ConvertOldRun	BIOMOD_ConvertOldRun
BIOMOD_cv	BIOMOD_cv
BIOMOD_EnsembleForecasting	BIOMOD_EnsembleForecasting
BIOMOD_EnsembleModeling	BIOMOD_EnsembleModeling
BIOMOD_FormatingData	BIOMOD_FormatingData
BIOMOD_LoadModels	BIOMOD_LoadModels
BIOMOD_Modeling	BIOMOD_Modeling
BIOMOD_ModelingOptions	BIOMOD_ModelingOptions
BIOMOD_presenceonly	BIOMOD_presenceonly
BIOMOD_Projection	BIOMOD_Projection
BIOMOD_RangeSize	BIOMOD_RangeSize
BIOMOD_RangeSize,array,array-method	BIOMOD_RangeSize
BIOMOD_RangeSize,data.frame,data.frame-method	BIOMOD_RangeSize
BIOMOD_RangeSize,RasterLayer,RasterLayer-method	BIOMOD_RangeSize
BIOMOD_RangeSize,RasterLayer,RasterStack-method	BIOMOD_RangeSize
BIOMOD_RangeSize,RasterStack,RasterStack-method	BIOMOD_RangeSize
BIOMOD_RangeSize-methods	BIOMOD_RangeSize
BIOMOD_tuning	BIOMOD_tuning
calculate.stat	calculate.stat
check_data_range	biomod2_model-class
CTA_biomod2_model	biomod2_model-class
CTA_biomod2_model-class	biomod2_model-class
CustomIndexMaker	CustomIndexMaker
data.frame-method	BinaryTransformation-methods
DF_to_ARRAY	DF_to_ARRAY
disk.pseudo.abs.selection	biomod2.inner-methods
disk.pseudo.abs.selection,ANY,RasterStack-method	biomod2.inner-methods
disk.pseudo.abs.selection,ANY,SpatialPointsDataFrame-method	biomod2.inner-methods
EMca_biomod2_model	biomod2_model-class
EMca_biomod2_model-class	biomod2_model-class
EMci_biomod2_model	biomod2_model-class
EMci_biomod2_model-class	biomod2_model-class
EMcv_biomod2_model	biomod2_model-class
EMcv_biomod2_model-class	biomod2_model-class
EMmean_biomod2_model	biomod2_model-class
EMmean_biomod2_model-class	biomod2_model-class
EMmedian_biomod2_model	biomod2_model-class
EMmedian_biomod2_model-class	biomod2_model-class
EMwmean_biomod2_model	biomod2_model-class
EMwmean_biomod2_model-class	biomod2_model-class
evaluate	evaluate
FDA_biomod2_model	biomod2_model-class
FDA_biomod2_model-class	biomod2_model-class
FilteringTransformation	FilteringTransformation
FilteringTransformation,array-method	FilteringTransformation
FilteringTransformation,data.frame-method	FilteringTransformation
FilteringTransformation,matrix-method	FilteringTransformation
FilteringTransformation,numeric-method	FilteringTransformation
FilteringTransformation,RasterBrick-method	FilteringTransformation
FilteringTransformation,RasterLayer-method	FilteringTransformation
FilteringTransformation,RasterStack-method	FilteringTransformation
FilteringTransformation-methods	FilteringTransformation
Find.Optim.Stat	Find.Optim.Stat
free	BIOMOD.projection.out-methods
free,BIOMOD.projection.out-method	BIOMOD.projection.out-methods
full_suffling	full_shuffling
GAM_biomod2_model	biomod2_model-class
GAM_biomod2_model-class	biomod2_model-class
GBM_biomod2_model	biomod2_model-class
GBM_biomod2_model-class	biomod2_model-class
getEMalgos	deprecated_functions
getEMalgos,BIOMOD.EnsembleModeling.out-method	deprecated_functions
getEMbuiltModels	deprecated_functions
getEMbuiltModels,BIOMOD.EnsembleModeling.out-method	deprecated_functions
getEMeval	deprecated_functions
getEMeval,BIOMOD.EnsembleModeling.out-method	deprecated_functions
getEMkeptModels	deprecated_functions
getEMkeptModels,BIOMOD.EnsembleModeling.out-method	deprecated_functions
getEM_needed_models	deprecated_functions
getEM_needed_models,BIOMOD.EnsembleModeling.out-method	deprecated_functions
getFormalModel	deprecated_functions
getFormalModel,biomod2_model-method	deprecated_functions
getModelsBuiltModels	deprecated_functions
getModelsBuiltModels,BIOMOD.models.out-method	deprecated_functions
getModelsEvaluations	deprecated_functions
getModelsEvaluations,BIOMOD.models.out-method	deprecated_functions
getModelsInputData	deprecated_functions
getModelsInputData,BIOMOD.models.out-method	deprecated_functions
getModelsOptions	deprecated_functions
getModelsOptions,BIOMOD.models.out-method	deprecated_functions
getModelsPrediction	deprecated_functions
getModelsPrediction,BIOMOD.models.out-method	deprecated_functions
getModelsPredictionEval	deprecated_functions
getModelsPredictionEval,BIOMOD.models.out-method	deprecated_functions
getModelsVarImport	deprecated_functions
getModelsVarImport,BIOMOD.models.out-method	deprecated_functions
getProjection	deprecated_functions
getProjection,BIOMOD.projection.out-method	deprecated_functions
getScalingModel	deprecated_functions
getScalingModel,biomod2_model-method	deprecated_functions
getStatOptimValue	getStatOptimValue
get_built_models	BIOMOD.models.out-methods
get_built_models,BIOMOD.EnsembleModeling.out-method	BIOMOD.models.out-methods
get_built_models,BIOMOD.models.out-method	BIOMOD.models.out-methods
get_calib_lines	BIOMOD.models.out-methods
get_calib_lines,BIOMOD.models.out-method	BIOMOD.models.out-methods
get_evaluations	BIOMOD.models.out-methods
get_evaluations,BIOMOD.EnsembleModeling.out-method	BIOMOD.models.out-methods
get_evaluations,BIOMOD.models.out-method	BIOMOD.models.out-methods
get_formal_data	BIOMOD.models.out-methods
get_formal_data,BIOMOD.models.out-method	BIOMOD.models.out-methods
get_formal_model	biomod2_model-class
get_formal_model,biomod2_model-method	biomod2_model-class
get_kept_models	BIOMOD.EnsembleModeling.out-methods
get_kept_models,BIOMOD.EnsembleModeling.out-method	BIOMOD.EnsembleModeling.out-methods
get_needed_models	BIOMOD.EnsembleModeling.out-methods
get_needed_models,BIOMOD.EnsembleModeling.out-method	BIOMOD.EnsembleModeling.out-methods
get_options	BIOMOD.models.out-methods
get_options,BIOMOD.models.out-method	BIOMOD.models.out-methods
get_predictions	BIOMOD.models.out-methods
get_predictions,BIOMOD.EnsembleModeling.out-method	BIOMOD.models.out-methods
get_predictions,BIOMOD.models.out-method	BIOMOD.models.out-methods
get_predictions,BIOMOD.projection.out-method	BIOMOD.models.out-methods
get_projected_models	BIOMOD.projection.out-methods
get_projected_models,BIOMOD.projection.out-method	BIOMOD.projection.out-methods
get_scaling_model	biomod2_model-class
get_scaling_model,biomod2_model-method	biomod2_model-class
get_variables_importance	BIOMOD.models.out-methods
get_variables_importance,BIOMOD.EnsembleModeling.out-method	BIOMOD.models.out-methods
get_variables_importance,BIOMOD.models.out-method	BIOMOD.models.out-methods
get_var_range	biomod2_model-class
get_var_type	biomod2_model-class
GLM_biomod2_model	biomod2_model-class
GLM_biomod2_model-class	biomod2_model-class
level.plot	level.plot
LIST_to_ARRAY	DF_to_ARRAY
load_stored_object	BIOMOD.stored.objects-methods
load_stored_object,BIOMOD.stored.data-method	BIOMOD.stored.objects-methods
makeFormula	makeFormula
MARS_biomod2_model	biomod2_model-class
MARS_biomod2_model-class	biomod2_model-class
matrix-method	BinaryTransformation-methods
MAXENT.Phillips_biomod2_model	biomod2_model-class
MAXENT.Phillips_biomod2_model-class	biomod2_model-class
MAXENT.Tsuruoka_biomod2_model	biomod2_model-class
MAXENT.Tsuruoka_biomod2_model-class	biomod2_model-class
models_scores_graph	models_scores_graph
multiple.plot	multiple.plot
numeric-method	BinaryTransformation-methods
plot,BIOMOD.formated.data,missing-method	BIOMOD.formated.data-class
plot,BIOMOD.formated.data.PA,missing-method	BIOMOD.formated.data-class
plot,BIOMOD.projection.out,missing-method	BIOMOD.projection.out-class
predict,ANN_biomod2_model-method	biomod2_model-class
predict,CTA_biomod2_model-method	biomod2_model-class
predict,EMca_biomod2_model-method	biomod2_model-class
predict,EMci_biomod2_model-method	biomod2_model-class
predict,EMcv_biomod2_model-method	biomod2_model-class
predict,EMmean_biomod2_model-method	biomod2_model-class
predict,EMmedian_biomod2_model-method	biomod2_model-class
predict,EMwmean_biomod2_model-method	biomod2_model-class
predict,FDA_biomod2_model-method	biomod2_model-class
predict,GAM_biomod2_model-method	biomod2_model-class
predict,GBM_biomod2_model-method	biomod2_model-class
predict,GLM_biomod2_model-method	biomod2_model-class
predict,MARS_biomod2_model-method	biomod2_model-class
predict,MAXENT.Phillips_biomod2_model-method	biomod2_model-class
predict,MAXENT.Tsuruoka_biomod2_model-method	biomod2_model-class
predict,RF_biomod2_model-method	biomod2_model-class
predict,SRE_biomod2_model-method	biomod2_model-class
Print_Default_ModelingOptions	Print_Default_ModelingOptions
ProbDensFunc	ProbDensFunc
Projection	biomod2.inner-methods
Projection,ANY,ANY,data.frame-method	biomod2.inner-methods
Projection,ANY,ANY,RasterStack-method	biomod2.inner-methods
random.pseudo.abs.selection	biomod2.inner-methods
random.pseudo.abs.selection,ANY,RasterStack-method	biomod2.inner-methods
random.pseudo.abs.selection,ANY,SpatialPointsDataFrame-method	biomod2.inner-methods
randomise_data	randomise_data
RasterBrick-method	BinaryTransformation-methods
RasterLayer-method	BinaryTransformation-methods
RasterStack-method	BinaryTransformation-methods
RemoveProperly	BIOMOD.models.out-RemoveProperly
RemoveProperly,BIOMOD.models.out-method	BIOMOD.models.out-RemoveProperly
response.plot	response.plot
response.plot2	response.plot2
RF_biomod2_model	biomod2_model-class
RF_biomod2_model-class	biomod2_model-class
sample.factor.levels	sample.factor.levels
SampleMat2	SampleMat2
show,BIOMOD.EnsembleModeling.out-method	BIOMOD.EnsembleModeling.out-class
show,BIOMOD.formated.data-method	BIOMOD.formated.data-class
show,BIOMOD.formated.data.PA-method	BIOMOD.formated.data-class
show,BIOMOD.Model.Options-method	BIOMOD.Model.Options-class
show,BIOMOD.models.out-method	BIOMOD.models.out-class
show,BIOMOD.projection.out-method	BIOMOD.projection.out-class
show,biomod2_model-method	biomod2_model-class
sre	sre
sre.pseudo.abs.selection	biomod2.inner-methods
sre.pseudo.abs.selection,ANY,RasterStack-method	biomod2.inner-methods
sre.pseudo.abs.selection,ANY,SpatialPointsDataFrame-method	biomod2.inner-methods
SRE_biomod2_model	biomod2_model-class
SRE_biomod2_model-class	biomod2_model-class
update_objects	update_objects
user.defined.pseudo.abs.selection	biomod2.inner-methods
user.defined.pseudo.abs.selection,ANY,RasterStack-method	biomod2.inner-methods
user.defined.pseudo.abs.selection,ANY,SpatialPointsDataFrame-method	biomod2.inner-methods
variables_importance	variables_importance
