* using log directory 'd:/Rcompile/CRANpkg/local/3.3/OpenMx.Rcheck' * using R version 3.3.3 (2017-03-06) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'OpenMx/DESCRIPTION' ... OK * this is package 'OpenMx' version '2.9.6' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'OpenMx' can be installed ... ERROR Installation failed. See 'd:/Rcompile/CRANpkg/local/3.3/OpenMx.Rcheck/00install.out' for details. * DONE The installation logfile: * installing *source* package 'OpenMx' ... ** package 'OpenMx' successfully unpacked and MD5 sums checked ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs *** arch - i386 make[1]: Entering directory `/cygdrive/d/temp/Rtmpi8IUvs/R.INSTALL280782ee2639/OpenMx/src-i386' d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c Compute.cpp -o Compute.o In file included from Compute.cpp:34:0: finiteDifferences.h:94:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] #pragma omp parallel for num_threads(curNumThreads) ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c ComputeGD.cpp -o ComputeGD.o In file included from ComputeGD.h:21:0, from ComputeGD.cpp:30: finiteDifferences.h:94:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] #pragma omp parallel for num_threads(curNumThreads) ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c ComputeNM.cpp -o ComputeNM.o In file included from ComputeGD.h:21:0, from ComputeNM.cpp:24: finiteDifferences.h:94:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] #pragma omp parallel for num_threads(curNumThreads) ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c ComputeNR.cpp -o ComputeNR.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c ComputeSD.cpp -o ComputeSD.o In file included from ComputeGD.h:21:0, from ComputeSD.cpp:3: finiteDifferences.h:94:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] #pragma omp parallel for num_threads(curNumThreads) ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c FellnerFitFunction.cpp -o FellnerFitFunction.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c MarkovExpectation.cpp -o MarkovExpectation.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c MarkovFF.cpp -o MarkovFF.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c ba81quad.cpp -o ba81quad.o In file included from ba81quad.cpp:18:0: ba81quad.h:949:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] #pragma omp parallel for num_threads(numThreads) ^ ba81quad.h:961:0: warning: ignoring #pragma omp atomic [-Wunknown-pragmas] #pragma omp atomic ^ ba81quad.h:978:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] #pragma omp parallel sections ^ ba81quad.h:981:0: warning: ignoring #pragma omp section [-Wunknown-pragmas] #pragma omp section ^ ba81quad.cpp:72:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] #pragma omp parallel for num_threads(ig.numThreads) ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c dmvnorm.cpp -o dmvnorm.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c fitMultigroup.cpp -o fitMultigroup.o d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O3 -Wall -std=gnu99 -mtune=core2 -c general.c -o general.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c glue.cpp -o glue.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c matrix.cpp -o matrix.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c merge.cpp -o merge.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c nanotimer.cpp -o nanotimer.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c nloptcpp.cpp -o nloptcpp.o In file included from ComputeGD.h:21:0, from nloptcpp.cpp:10: finiteDifferences.h:94:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] #pragma omp parallel for num_threads(curNumThreads) ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c omxAlgebra.cpp -o omxAlgebra.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c omxAlgebraFitFunction.cpp -o omxAlgebraFitFunction.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c omxData.cpp -o omxData.o In file included from omxExpectationBA81.h:21:0, from omxData.cpp:30: ba81quad.h:949:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] #pragma omp parallel for num_threads(numThreads) ^ ba81quad.h:961:0: warning: ignoring #pragma omp atomic [-Wunknown-pragmas] #pragma omp atomic ^ ba81quad.h:978:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] #pragma omp parallel sections ^ ba81quad.h:981:0: warning: ignoring #pragma omp section [-Wunknown-pragmas] #pragma omp section ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c omxExpectation.cpp -o omxExpectation.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c omxExpectationBA81.cpp -o omxExpectationBA81.o In file included from omxExpectationBA81.h:21:0, from omxExpectationBA81.cpp:20: ba81quad.h:949:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] #pragma omp parallel for num_threads(numThreads) ^ ba81quad.h:961:0: warning: ignoring #pragma omp atomic [-Wunknown-pragmas] #pragma omp atomic ^ ba81quad.h:978:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] #pragma omp parallel sections ^ ba81quad.h:981:0: warning: ignoring #pragma omp section [-Wunknown-pragmas] #pragma omp section ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c omxExportBackendState.cpp -o omxExportBackendState.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=c++0x -I"D:/RCompile/recent/R-3.3.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppEigen/include" -I"d:/RCompile/CRANpkg/lib/3.3/StanHeaders/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/RCompile/CRANpkg/lib/3.3/rpf/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c omxFIMLFitFunction.cpp -o omxFIMLFitFunction.o omxFIMLFitFunction.cpp:903:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] #pragma omp parallel for num_threads(myParent->curParallelism) reduction(||:failed) ^ omxFIMLFitFunction.cpp: In member function 'virtual void omxFIMLFitFunction::invalidateCache()': omxFIMLFitFunction.cpp:821:48: error: 'typeof' was not declared in this scope rowCount = std::numeric_limits::max(); ^ omxFIMLFitFunction.cpp:821:49: error: template argument 1 is invalid rowCount = std::numeric_limits::max(); ^ omxFIMLFitFunction.cpp: In member function 'virtual void omxFIMLFitFunction::init()': omxFIMLFitFunction.cpp:1057:56: error: 'typeof' was not declared in this scope newObj->rowCount = std::numeric_limits::max(); ^ omxFIMLFitFunction.cpp:1057:57: error: template argument 1 is invalid newObj->rowCount = std::numeric_limits::max(); ^ make[1]: *** [omxFIMLFitFunction.o] Error 1 make[1]: Leaving directory `/cygdrive/d/temp/Rtmpi8IUvs/R.INSTALL280782ee2639/OpenMx/src-i386' Warning: running command 'make -f "Makevars.win" -f "D:/RCompile/recent/R-3.3.3/etc/i386/Makeconf" -f "D:/RCompile/recent/R-3.3.3/etc/i386/Makevars.site" -f "D:/RCompile/recent/R-3.3.3/share/make/winshlib.mk" CXX='$(CXX1X) $(CXX1XSTD)' CXXFLAGS='$(CXX1XFLAGS)' CXXPICFLAGS='$(CXX1XPICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX1XLDFLAGS)' SHLIB_LD='$(SHLIB_CXX1XLD)' SHLIB="OpenMx.dll" SHLIB_LIBADD='$(FLIBS)' OBJECTS="Compute.o ComputeGD.o ComputeNM.o ComputeNR.o ComputeSD.o FellnerFitFunction.o MarkovExpectation.o MarkovFF.o ba81quad.o dmvnorm.o fitMultigroup.o general.o glue.o matrix.o merge.o nanotimer.o nloptcpp.o omxAlgebra.o omxAlgebraFitFunction.o omxData.o omxExpectation.o omxExpectationBA81.o omxExportBackendState.o omxFIMLFitFunction.o omxFitFunction.o omxFitFunctionBA81.o omxGREMLExpectation.o omxGREMLfitfunction.o omxHessianCalculation.o omxImportFrontendState.o omxLISRELExpectation.o omxMLFitFunction.o omxMatrix.o omxNPSOLSpecific.o omxNormalExpectation.o omxRAMExpectation.o omxRFitFunction.o [... truncated] ERROR: compilation failed for package 'OpenMx' * removing 'd:/Rcompile/CRANpkg/lib/3.3/OpenMx' * restoring previous 'd:/Rcompile/CRANpkg/lib/3.3/OpenMx'