* using log directory 'd:/Rcompile/CRANpkg/local/3.3/lfe.Rcheck'
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'lfe/DESCRIPTION' ... OK
* this is package 'lfe' version '2.6-2291'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'lfe' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [11s] OK
** checking differences from 'lfe-Ex_i386.Rout' to 'lfe-Ex.Rout.save' ... OK

169c169
< [1] 0.0004447348
---
> [1] 0.0004464837
353,355c353,355
< blue   3.060994e-11 -3.599203e-11  2.015080e-11
< green  2.548085e-11 -3.126924e-11  2.381344e-11
< red   -4.700121e-11  5.643630e-11 -3.724253e-11
---
> blue   1.832421e-12 -5.045401e-11  1.211166e-11
> green  1.862484e-12 -4.625585e-11  5.738506e-12
> red   -3.115460e-12  8.128143e-11 -1.470903e-11
359,361c359,361
< blue   3.088562e-18 -1.143598e-17  5.768280e-18
< green -6.248947e-19  1.489102e-17 -3.506298e-17
< red   -2.100140e-17 -3.259395e-17 -4.842770e-18
---
> blue  -2.051028e-17 9.444344e-18 -3.574544e-17
> green -8.673617e-18 3.469447e-19  5.172753e-18
> red   -6.370692e-18 3.396477e-17  1.075067e-17
365,367c365,367
< blue  -2.397387e-11  9.100641e-12  1.789387e-11
< green  9.391073e-12  5.362582e-12 -2.087638e-11
< red    1.307986e-11 -1.429487e-11  4.728885e-12
---
> blue  -1.744820e-11  2.885894e-11 -1.650047e-11
> green  1.293615e-11 -5.983123e-12  1.088000e-11
> red    3.143348e-12 -2.130632e-11  4.387097e-12
371,373c371,373
< blue   2.368314e-12  1.676022e-12 -5.536613e-12
< green  2.811084e-12 -1.155734e-12 -2.627220e-12
< red   -5.774245e-12 -6.359207e-13  9.171416e-12
---
> blue   3.539578e-12 -1.447864e-12  2.761446e-12
> green  1.931682e-12 -3.174342e-12  2.132959e-12
> red   -6.139949e-12  5.127238e-12 -5.476854e-12
797c797
< > ### Aliases: lfe-package lfe
---
> > ### Aliases: lfe lfe-package
1045c1045,1052
< 0.17454350 0.46534907 0.02614234 1.22465055 
---
> 0.17451096 0.46528974 0.02610547 1.22465745 
> > ## No test: 
> > # the covariance matrix:
> > nlexpect(est, tcrossprod(as.matrix(c(x1-pt1,x2-pt2))))
>             x1         x2
> x1  0.02612555 -0.1222348
> x2 -0.12223476  1.2249513
> > ## End(No test)
1058a1066,1107
> > ## No test: 
> > # then a joint test. Here we find the probability that
> > # we are further from origo than the point estimates, measured
> > # in a variance normalized coordinate system.
> > waldtest(est, ~ x1 | x2)['p.F']
>      p.F 
> 0.157677 
> > #inverse cholesky
> > ich <- solve(t(chol(vcov(est)[c('x1','x2'), c('x1','x2')])))
> > # convert to normalized coordinates
> > nz <- sum((ich %*% c(pt1,pt2))^2)
> > # find probability that we're further away
> > nlexpect(est, sum((ich %*% c(x1-pt1,x2-pt2))^2) > nz)
> [1] 0.1577703
> > # or use the .z argument provided automatically
> > nlexpect(est, sum(.z^2) > nz, coefs=c('x1','x2'))
> [1] 0.1577703
> > 
> > # Non-linear test:
> > f <- function(x) c(poly=x[['x1']]*(6*x[['x1']]-x[['x2']]^2))
> > waldtest(est, f)['p.F']
>       p.F 
> 0.7432511 
> > # In general, for a function f, the non-linear Wald test is something like
> > # the following:
> > # expected value of function
> > Ef <- nlexpect(est, f, coefs=c('x1','x2'))
> > # point value of function
> > Pf <- f(c(pt1,pt2))
> > # similar to a Wald test:
> > nlexpect(est, function(x) (f(x)-Ef)^2 > Pf^2, c('x1','x2'))
>      poly 
> 0.6828497 
> > # one-sided
> > nlexpect(est, function(x) f(x)-Ef > abs(Pf), c('x1','x2'))
>      poly 
> 0.2683363 
> > # other sided
> > nlexpect(est, function(x) f(x)-Ef < -abs(Pf), c('x1','x2'))
>      poly 
> 0.4144826 
> > ## End(No test)
Warning message:
running command 'diff -bw "D:\temp\RtmpUhmHN0\Rdiffa3db833ce5014" "D:\temp\RtmpUhmHN0\Rdiffb3db8617431b"' had status 1 
** running examples for arch 'x64' ... [13s] OK
** checking differences from 'lfe-Ex_x64.Rout' to 'lfe-Ex.Rout.save' ... OK

797c797
< > ### Aliases: lfe-package lfe
---
> > ### Aliases: lfe lfe-package
1045c1045,1052
< 0.17451098 0.46528969 0.02610547 1.22466071 
---
> 0.17451096 0.46528974 0.02610547 1.22465745 
> > ## No test: 
> > # the covariance matrix:
> > nlexpect(est, tcrossprod(as.matrix(c(x1-pt1,x2-pt2))))
>             x1         x2
> x1  0.02612555 -0.1222348
> x2 -0.12223476  1.2249513
> > ## End(No test)
1058a1066,1107
> > ## No test: 
> > # then a joint test. Here we find the probability that
> > # we are further from origo than the point estimates, measured
> > # in a variance normalized coordinate system.
> > waldtest(est, ~ x1 | x2)['p.F']
>      p.F 
> 0.157677 
> > #inverse cholesky
> > ich <- solve(t(chol(vcov(est)[c('x1','x2'), c('x1','x2')])))
> > # convert to normalized coordinates
> > nz <- sum((ich %*% c(pt1,pt2))^2)
> > # find probability that we're further away
> > nlexpect(est, sum((ich %*% c(x1-pt1,x2-pt2))^2) > nz)
> [1] 0.1577703
> > # or use the .z argument provided automatically
> > nlexpect(est, sum(.z^2) > nz, coefs=c('x1','x2'))
> [1] 0.1577703
> > 
> > # Non-linear test:
> > f <- function(x) c(poly=x[['x1']]*(6*x[['x1']]-x[['x2']]^2))
> > waldtest(est, f)['p.F']
>       p.F 
> 0.7432511 
> > # In general, for a function f, the non-linear Wald test is something like
> > # the following:
> > # expected value of function
> > Ef <- nlexpect(est, f, coefs=c('x1','x2'))
> > # point value of function
> > Pf <- f(c(pt1,pt2))
> > # similar to a Wald test:
> > nlexpect(est, function(x) (f(x)-Ef)^2 > Pf^2, c('x1','x2'))
>      poly 
> 0.6828497 
> > # one-sided
> > nlexpect(est, function(x) f(x)-Ef > abs(Pf), c('x1','x2'))
>      poly 
> 0.2683363 
> > # other sided
> > nlexpect(est, function(x) f(x)-Ef < -abs(Pf), c('x1','x2'))
>      poly 
> 0.4144826 
> > ## End(No test)
Warning message:
running command 'diff -bw "D:\temp\RtmpEJPWIy\Rdiffa27e5c3a013af3" "D:\temp\RtmpEJPWIy\Rdiffb27e5cc4e7b"' had status 1 
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ... [43s] OK
  Running 'anomalies.R' [2s]
  Comparing 'anomalies.Rout' to 'anomalies.Rout.save' ... OK
  Running 'bctest.R' [2s]
  Comparing 'bctest.Rout' to 'bctest.Rout.save' ... OK
  Running 'cgsolve.R' [2s]
  Comparing 'cgsolve.Rout' to 'cgsolve.Rout.save' ... OK
  Running 'cluster.R' [2s]
  Comparing 'cluster.Rout' to 'cluster.Rout.save' ... OK
  Running 'comparelm.R' [2s]
  Comparing 'comparelm.Rout' to 'comparelm.Rout.save' ... OK
  Running 'degenerate.R' [2s]
  Comparing 'degenerate.Rout' to 'degenerate.Rout.save' ... OK
  Running 'efcheck.R' [3s]
  Comparing 'efcheck.Rout' to 'efcheck.Rout.save' ... OK
  Running 'fourfac.R' [3s]
  Comparing 'fourfac.Rout' to 'fourfac.Rout.save' ... OK
  Running 'intact.R' [2s]
  Comparing 'intact.Rout' to 'intact.Rout.save' ... OK
  Running 'interact.R' [2s]
  Comparing 'interact.Rout' to 'interact.Rout.save' ... OK
  Running 'ivtest.R' [2s]
  Comparing 'ivtest.Rout' to 'ivtest.Rout.save' ... OK
  Running 'lfetest.R' [2s]
  Comparing 'lfetest.Rout' to 'lfetest.Rout.save' ...41c41
< 3  1.03e-09  2.47e-09
---
> 3  4.65e-10  1.30e-10
43c43
< 5 -2.24e-08 -2.71e-08
---
> 5 -2.28e-08 -2.91e-08
57c57
< [3,]  1.03e-09  2.47e-09
---
> [3,]  4.65e-10  1.30e-10
59c59
< [5,] -2.24e-08 -2.71e-08
---
> [5,] -2.28e-08 -2.91e-08
  Running 'mlhs.R' [4s]
  Comparing 'mlhs.Rout' to 'mlhs.Rout.save' ... OK
  Running 'multiway.R' [2s]
  Comparing 'multiway.Rout' to 'multiway.Rout.save' ... OK
  Running 'naomit.R' [2s]
  Comparing 'naomit.Rout' to 'naomit.Rout.save' ... OK
  Running 'nonest.R' [2s]
  Comparing 'nonest.Rout' to 'nonest.Rout.save' ... OK
  Running 'onefac.R' [2s]
  Comparing 'onefac.Rout' to 'onefac.Rout.save' ... OK
  Running 'verify.R' [3s]
  Comparing 'verify.Rout' to 'verify.Rout.save' ... OK
  Running 'weights.R' [3s]
  Comparing 'weights.Rout' to 'weights.Rout.save' ... OK
** running tests for arch 'x64' ... [52s] OK
  Running 'anomalies.R' [3s]
  Comparing 'anomalies.Rout' to 'anomalies.Rout.save' ... OK
  Running 'bctest.R' [3s]
  Comparing 'bctest.Rout' to 'bctest.Rout.save' ... OK
  Running 'cgsolve.R' [2s]
  Comparing 'cgsolve.Rout' to 'cgsolve.Rout.save' ... OK
  Running 'cluster.R' [2s]
  Comparing 'cluster.Rout' to 'cluster.Rout.save' ... OK
  Running 'comparelm.R' [2s]
  Comparing 'comparelm.Rout' to 'comparelm.Rout.save' ... OK
  Running 'degenerate.R' [2s]
  Comparing 'degenerate.Rout' to 'degenerate.Rout.save' ... OK
  Running 'efcheck.R' [3s]
  Comparing 'efcheck.Rout' to 'efcheck.Rout.save' ... OK
  Running 'fourfac.R' [3s]
  Comparing 'fourfac.Rout' to 'fourfac.Rout.save' ... OK
  Running 'intact.R' [3s]
  Comparing 'intact.Rout' to 'intact.Rout.save' ... OK
  Running 'interact.R' [3s]
  Comparing 'interact.Rout' to 'interact.Rout.save' ... OK
  Running 'ivtest.R' [2s]
  Comparing 'ivtest.Rout' to 'ivtest.Rout.save' ... OK
  Running 'lfetest.R' [2s]
  Comparing 'lfetest.Rout' to 'lfetest.Rout.save' ... OK
  Running 'mlhs.R' [5s]
  Comparing 'mlhs.Rout' to 'mlhs.Rout.save' ... OK
  Running 'multiway.R' [2s]
  Comparing 'multiway.Rout' to 'multiway.Rout.save' ... OK
  Running 'naomit.R' [2s]
  Comparing 'naomit.Rout' to 'naomit.Rout.save' ... OK
  Running 'nonest.R' [2s]
  Comparing 'nonest.Rout' to 'nonest.Rout.save' ... OK
  Running 'onefac.R' [2s]
  Comparing 'onefac.Rout' to 'onefac.Rout.save' ... OK
  Running 'verify.R' [4s]
  Comparing 'verify.Rout' to 'verify.Rout.save' ... OK
  Running 'weights.R' [3s]
  Comparing 'weights.Rout' to 'weights.Rout.save' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [65s] OK
* checking PDF version of manual ... OK
* DONE
Status: OK