* using log directory 'd:/Rcompile/CRANpkg/local/3.3/sf.Rcheck' * using R version 3.3.3 (2017-03-06) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'sf/DESCRIPTION' ... OK * this is package 'sf' version '0.6-1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'sf' can be installed ... OK * checking installed package size ... NOTE installed size is 93.2Mb sub-directories of 1Mb or more: doc 10.7Mb gdal 3.9Mb libs 69.9Mb proj 5.0Mb sqlite 1.5Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... [25s] OK ** running examples for arch 'x64' ... [29s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... [71s] OK Running 'aggregate.R' [1s] Comparing 'aggregate.Rout' to 'aggregate.Rout.save' ...4c4 < Linking to GEOS 3.6.1, GDAL 2.2.3, proj.4 4.9.3 --- > Linking to GEOS 3.5.1, GDAL 2.2.1, proj.4 4.9.3 Running 'cast.R' [1s] Comparing 'cast.Rout' to 'cast.Rout.save' ... OK Running 'crs.R' [1s] Comparing 'crs.Rout' to 'crs.Rout.save' ... OK Running 'dist.R' [2s] Comparing 'dist.Rout' to 'dist.Rout.save' ...30,33c30,33 < [1,] 11.58615 0.000000e+00 2.910383e-11 0.000000e+00 0.000000e+00 < [2,] 11.76865 0.000000e+00 0.000000e+00 2.910383e-11 0.000000e+00 < [3,] 12.28011 0.000000e+00 0.000000e+00 0.000000e+00 2.910383e-11 < [4,] 13.02504 2.910383e-11 0.000000e+00 0.000000e+00 0.000000e+00 --- > [1,] 11.58615 0.000000e+00 2.910383e-11 0.000000e+00 5.820766e-11 > [2,] 11.76865 0.000000e+00 0.000000e+00 -2.910383e-11 0.000000e+00 > [3,] 12.28011 0.000000e+00 0.000000e+00 -1.455192e-11 2.910383e-11 > [4,] 13.02504 -2.910383e-11 -1.455192e-11 0.000000e+00 1.455192e-11 42,45c42,45 < [1,] 0.000000e+00 0 0 0 0 < [2,] 0.000000e+00 0 0 0 0 < [3,] -1.776357e-15 0 0 0 0 < [4,] 0.000000e+00 0 0 0 0 --- > [1,] 0 0 0 0 0 > [2,] 0 0 0 0 0 > [3,] 0 0 0 0 0 > [4,] 0 0 0 0 0 Running 'dplyr.R' [5s] Comparing 'dplyr.Rout' to 'dplyr.Rout.save' ...76,79c76,79 < 1 (0,0.1] 0.0760 (((-77.96073 34.18924, -77.96587 34.24229, -77.9752~ < 2 (0.1,0.12] 0.112 (((-84.29104 35.21054, -84.22594 35.2616, -84.17973~ < 3 (0.12,0.15] 0.134 (((-76.54427 34.58783, -76.55515 34.61066, -76.5377~ < 4 (0.15,0.25] 0.190 (((-76.64705 34.90633, -76.62562 34.89065, -76.7502~ --- > 1 (0,0.1] 0.0760 (((-77.96073 34.18924, -77.96587 34.24229, -77.9752… > 2 (0.1,0.12] 0.112 (((-84.29104 35.21054, -84.22594 35.2616, -84.17973… > 3 (0.12,0.15] 0.134 (((-76.54427 34.58783, -76.55515 34.61066, -76.5377… > 4 (0.15,0.25] 0.190 (((-76.64705 34.90633, -76.62562 34.89065, -76.7502… 189c189 < 1 2.589362e-06 person/m^2 (((834893.7 95747.49, 833834.2 98254.6, 835420.2 986~ --- > 1 2.589362e-06 person/m^2 (((834893.7 95747.49, 833834.2 98254.6, 835420.2 986… 211c211 < 1 329962 person (((834893.7 95747.49, 833834.2 98254.6, 835420.2 98655.7~ --- > 1 329962 person (((834893.7 95747.49, 833834.2 98254.6, 835420.2 98655.7… Running 'empty.R' [1s] Comparing 'empty.Rout' to 'empty.Rout.save' ... OK Running 'gdal_geom.R' [2s] Comparing 'gdal_geom.Rout' to 'gdal_geom.Rout.save' ...100c100 < GDAL has 73 drivers --- > GDAL has 80 drivers 279a280,290 > Geometry set for 2 features > geometry type: POLYGON > dimension: XY > bbox: xmin: -35.72958 ymin: 14.27042 xmax: 12.72958 ymax: 57.72958 > epsg (SRID): 4326 > proj4string: +proj=longlat +datum=WGS84 +no_defs > POLYGON ((12.72958 52, 12.72173 51.70014, 12.69... > POLYGON ((-24.27042 20, -24.27827 19.70014, -24... > Warning message: > In st_buffer.sfc(sfc, units::set_units(0.1, rad)) : > st_buffer does not correctly buffer longitude/latitude data Running 'geos.R' [11s] Comparing 'geos.Rout' to 'geos.Rout.save' ...377a378,380 > Warning message: > In classInt::classIntervals(na.omit(values), min(nbreaks, n.unq), : > n same as number of different finite values\neach different finite value is a separate class Running 'graticule.R' [5s] Comparing 'graticule.Rout' to 'graticule.Rout.save' ... OK Running 'grid.R' [1s] Comparing 'grid.Rout' to 'grid.Rout.save' ... OK Running 'plot.R' [11s] Comparing 'plot.Rout' to 'plot.Rout.save' ...48a49,51 > Warning message: > In classInt::classIntervals(na.omit(values), min(nbreaks, n.unq), : > n same as number of different finite values\neach different finite value is a separate class Running 'read.R' [2s] Comparing 'read.Rout' to 'read.Rout.save' ...256c256 < Integer64 values larger than 9.0072e+015 lost significance after conversion to double; --- > Integer64 values larger than 9.0072e+15 lost significance after conversion to double; 298c298 < 2 POINT (367470.5 4962415) --- > 2 POINT (367470.5 4962414) 334c334 < Reading layer `Parcely' from data source `D:\temp\RtmpC6ARc3\RLIBS_261f84a401556\sf\gml\20170930_OB_530964_UKSH.xml.gz' using driver `GML' --- > Reading layer `Parcely' from data source `/home/edzer/git/sf.Rcheck/sf/gml/20170930_OB_530964_UKSH.xml.gz' using driver `GML' 352c352 < Reading layer `Parcely' from data source `D:\temp\RtmpC6ARc3\RLIBS_261f84a401556\sf\gml\20170930_OB_530964_UKSH.xml.gz' using driver `GML' --- > Reading layer `Parcely' from data source `/home/edzer/git/sf.Rcheck/sf/gml/20170930_OB_530964_UKSH.xml.gz' using driver `GML' Running 'roundtrip.R' [8s] Comparing 'roundtrip.Rout' to 'roundtrip.Rout.save' ... OK Running 'sfc.R' [5s] Comparing 'sfc.Rout' to 'sfc.Rout.save' ...385c385 < "3.6.1" "2.2.3" "4.9.3" --- > "3.5.1" "2.2.1" "4.9.3" 665c665 < Reading layer `nc' from data source `D:\temp\RtmpC6ARc3\RLIBS_261f84a401556\sf\shape\nc.shp' using driver `ESRI Shapefile' --- > Reading layer `nc' from data source `/home/edzer/git/sf.Rcheck/sf/shape/nc.shp' using driver `ESRI Shapefile' Running 'sfg.R' [1s] Comparing 'sfg.Rout' to 'sfg.Rout.save' ... OK Running 'stars.R' [1s] Comparing 'stars.Rout' to 'stars.Rout.save' ... OK Running 'testthat.R' [9s] Comparing 'testthat.Rout' to 'testthat.Rout.save' ...21d20 < XXX: path0=D:\temp\RtmpSy0goI\file567c87f7ce8.nc path=D:\temp\RtmpSy0goI\file567c87f7ce8.nc 24c23 < Dataset D:\temp\RtmpSy0goI\file567c49a3359.gpkg already exists: remove first, use update=TRUE to append, --- > Dataset /tmp/RtmpuC9YAX/file55731aceba68.gpkg already exists: remove first, use update=TRUE to append, 33,34c32,33 < == testthat results =========================================================== < OK: 529 SKIPPED: 11 FAILED: 0 --- > testthat results ================================================================ > OK: 607 SKIPPED: 0 FAILED: 0 Running 'units.R' [1s] Comparing 'units.Rout' to 'units.Rout.save' ... OK Running 'wkb.R' [1s] Comparing 'wkb.Rout' to 'wkb.Rout.save' ... OK Running 'zzz.R' [3s] Comparing 'zzz.Rout' to 'zzz.Rout.save' ...6c6 < spatstat 1.55-1 (nickname: 'Gamble Responsibly') --- > spatstat 1.55-0 (nickname: 'Stunned Mullet') 9,10d8 < < Note: R version 3.3.3 (2017-03-06) is more than 9 months old; we strongly recommend upgrading to the latest version 43,52c41,50 < 1 window POLYGON ((585391.9 675110, ... < 2 point major dry 2006-01-06 POINT (582518.4 676886.2) < 3 point major dry 2006-01-10 POINT (581823 677422.7) < 4 point major dry 2006-01-15 POINT (582131 676937.9) < 5 point major dry 2006-01-24 POINT (582111.9 677420) < 6 point minor dry 2006-01-27 POINT (582585.1 677509.7) < 7 point major dry 2006-01-28 POINT (582302.3 677521.6) < 8 point major dry 2006-02-01 POINT (583167.2 676730.5) < 9 point major dry 2006-02-03 POINT (583584.5 677207.1) < 10 point major dry 2006-02-13 POINT (583117.8 676850.3) --- > NA window POLYGON ((585391.9 675110, ... > 1 point major dry 2006-01-06 POINT (582518.4 676886.2) > 2 point major dry 2006-01-10 POINT (581823 677422.7) > 3 point major dry 2006-01-15 POINT (582131 676937.9) > 4 point major dry 2006-01-24 POINT (582111.9 677420) > 5 point minor dry 2006-01-27 POINT (582585.1 677509.7) > 6 point major dry 2006-01-28 POINT (582302.3 677521.6) > 7 point major dry 2006-02-01 POINT (583167.2 676730.5) > 8 point major dry 2006-02-03 POINT (583584.5 677207.1) > 9 point major dry 2006-02-13 POINT (583117.8 676850.3) ** running tests for arch 'x64' ... [74s] OK Running 'aggregate.R' [1s] Comparing 'aggregate.Rout' to 'aggregate.Rout.save' ...4c4 < Linking to GEOS 3.6.1, GDAL 2.2.3, proj.4 4.9.3 --- > Linking to GEOS 3.5.1, GDAL 2.2.1, proj.4 4.9.3 Running 'cast.R' [1s] Comparing 'cast.Rout' to 'cast.Rout.save' ... OK Running 'crs.R' [1s] Comparing 'crs.Rout' to 'crs.Rout.save' ... OK Running 'dist.R' [2s] Comparing 'dist.Rout' to 'dist.Rout.save' ... OK Running 'dplyr.R' [5s] Comparing 'dplyr.Rout' to 'dplyr.Rout.save' ...76,79c76,79 < 1 (0,0.1] 0.0760 (((-77.96073 34.18924, -77.96587 34.24229, -77.9752~ < 2 (0.1,0.12] 0.112 (((-84.29104 35.21054, -84.22594 35.2616, -84.17973~ < 3 (0.12,0.15] 0.134 (((-76.54427 34.58783, -76.55515 34.61066, -76.5377~ < 4 (0.15,0.25] 0.190 (((-76.64705 34.90633, -76.62562 34.89065, -76.7502~ --- > 1 (0,0.1] 0.0760 (((-77.96073 34.18924, -77.96587 34.24229, -77.9752… > 2 (0.1,0.12] 0.112 (((-84.29104 35.21054, -84.22594 35.2616, -84.17973… > 3 (0.12,0.15] 0.134 (((-76.54427 34.58783, -76.55515 34.61066, -76.5377… > 4 (0.15,0.25] 0.190 (((-76.64705 34.90633, -76.62562 34.89065, -76.7502… 189c189 < 1 2.589362e-06 person/m^2 (((834893.7 95747.49, 833834.2 98254.6, 835420.2 986~ --- > 1 2.589362e-06 person/m^2 (((834893.7 95747.49, 833834.2 98254.6, 835420.2 986… 211c211 < 1 329962 person (((834893.7 95747.49, 833834.2 98254.6, 835420.2 98655.7~ --- > 1 329962 person (((834893.7 95747.49, 833834.2 98254.6, 835420.2 98655.7… Running 'empty.R' [1s] Comparing 'empty.Rout' to 'empty.Rout.save' ... OK Running 'gdal_geom.R' [2s] Comparing 'gdal_geom.Rout' to 'gdal_geom.Rout.save' ...100c100 < GDAL has 73 drivers --- > GDAL has 80 drivers 279a280,290 > Geometry set for 2 features > geometry type: POLYGON > dimension: XY > bbox: xmin: -35.72958 ymin: 14.27042 xmax: 12.72958 ymax: 57.72958 > epsg (SRID): 4326 > proj4string: +proj=longlat +datum=WGS84 +no_defs > POLYGON ((12.72958 52, 12.72173 51.70014, 12.69... > POLYGON ((-24.27042 20, -24.27827 19.70014, -24... > Warning message: > In st_buffer.sfc(sfc, units::set_units(0.1, rad)) : > st_buffer does not correctly buffer longitude/latitude data Running 'geos.R' [10s] Comparing 'geos.Rout' to 'geos.Rout.save' ...377a378,380 > Warning message: > In classInt::classIntervals(na.omit(values), min(nbreaks, n.unq), : > n same as number of different finite values\neach different finite value is a separate class Running 'graticule.R' [4s] Comparing 'graticule.Rout' to 'graticule.Rout.save' ... OK Running 'grid.R' [2s] Comparing 'grid.Rout' to 'grid.Rout.save' ... OK Running 'plot.R' [11s] Comparing 'plot.Rout' to 'plot.Rout.save' ...48a49,51 > Warning message: > In classInt::classIntervals(na.omit(values), min(nbreaks, n.unq), : > n same as number of different finite values\neach different finite value is a separate class Running 'read.R' [3s] Comparing 'read.Rout' to 'read.Rout.save' ...256c256 < Integer64 values larger than 9.0072e+015 lost significance after conversion to double; --- > Integer64 values larger than 9.0072e+15 lost significance after conversion to double; 298c298 < 2 POINT (367470.5 4962415) --- > 2 POINT (367470.5 4962414) 334c334 < Reading layer `Parcely' from data source `D:\temp\RtmpC6ARc3\RLIBS_261f84a401556\sf\gml\20170930_OB_530964_UKSH.xml.gz' using driver `GML' --- > Reading layer `Parcely' from data source `/home/edzer/git/sf.Rcheck/sf/gml/20170930_OB_530964_UKSH.xml.gz' using driver `GML' 352c352 < Reading layer `Parcely' from data source `D:\temp\RtmpC6ARc3\RLIBS_261f84a401556\sf\gml\20170930_OB_530964_UKSH.xml.gz' using driver `GML' --- > Reading layer `Parcely' from data source `/home/edzer/git/sf.Rcheck/sf/gml/20170930_OB_530964_UKSH.xml.gz' using driver `GML' Running 'roundtrip.R' [9s] Comparing 'roundtrip.Rout' to 'roundtrip.Rout.save' ... OK Running 'sfc.R' [5s] Comparing 'sfc.Rout' to 'sfc.Rout.save' ...385c385 < "3.6.1" "2.2.3" "4.9.3" --- > "3.5.1" "2.2.1" "4.9.3" 665c665 < Reading layer `nc' from data source `D:\temp\RtmpC6ARc3\RLIBS_261f84a401556\sf\shape\nc.shp' using driver `ESRI Shapefile' --- > Reading layer `nc' from data source `/home/edzer/git/sf.Rcheck/sf/shape/nc.shp' using driver `ESRI Shapefile' Running 'sfg.R' [1s] Comparing 'sfg.Rout' to 'sfg.Rout.save' ... OK Running 'stars.R' [1s] Comparing 'stars.Rout' to 'stars.Rout.save' ... OK Running 'testthat.R' [9s] Comparing 'testthat.Rout' to 'testthat.Rout.save' ...21d20 < XXX: path0=D:\temp\RtmpYPTyfG\filefc2432e71618.nc path=D:\temp\RtmpYPTyfG\filefc2432e71618.nc 24c23 < Dataset D:\temp\RtmpYPTyfG\filefc246b5e21fe.gpkg already exists: remove first, use update=TRUE to append, --- > Dataset /tmp/RtmpuC9YAX/file55731aceba68.gpkg already exists: remove first, use update=TRUE to append, 33,34c32,33 < == testthat results =========================================================== < OK: 529 SKIPPED: 11 FAILED: 0 --- > testthat results ================================================================ > OK: 607 SKIPPED: 0 FAILED: 0 Running 'units.R' [1s] Comparing 'units.Rout' to 'units.Rout.save' ... OK Running 'wkb.R' [1s] Comparing 'wkb.Rout' to 'wkb.Rout.save' ... OK Running 'zzz.R' [3s] Comparing 'zzz.Rout' to 'zzz.Rout.save' ...6c6 < spatstat 1.55-1 (nickname: 'Gamble Responsibly') --- > spatstat 1.55-0 (nickname: 'Stunned Mullet') 9,10d8 < < Note: R version 3.3.3 (2017-03-06) is more than 9 months old; we strongly recommend upgrading to the latest version 43,52c41,50 < 1 window POLYGON ((585391.9 675110, ... < 2 point major dry 2006-01-06 POINT (582518.4 676886.2) < 3 point major dry 2006-01-10 POINT (581823 677422.7) < 4 point major dry 2006-01-15 POINT (582131 676937.9) < 5 point major dry 2006-01-24 POINT (582111.9 677420) < 6 point minor dry 2006-01-27 POINT (582585.1 677509.7) < 7 point major dry 2006-01-28 POINT (582302.3 677521.6) < 8 point major dry 2006-02-01 POINT (583167.2 676730.5) < 9 point major dry 2006-02-03 POINT (583584.5 677207.1) < 10 point major dry 2006-02-13 POINT (583117.8 676850.3) --- > NA window POLYGON ((585391.9 675110, ... > 1 point major dry 2006-01-06 POINT (582518.4 676886.2) > 2 point major dry 2006-01-10 POINT (581823 677422.7) > 3 point major dry 2006-01-15 POINT (582131 676937.9) > 4 point major dry 2006-01-24 POINT (582111.9 677420) > 5 point minor dry 2006-01-27 POINT (582585.1 677509.7) > 6 point major dry 2006-01-28 POINT (582302.3 677521.6) > 7 point major dry 2006-02-01 POINT (583167.2 676730.5) > 8 point major dry 2006-02-03 POINT (583584.5 677207.1) > 9 point major dry 2006-02-13 POINT (583117.8 676850.3) * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [41s] OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE