Configure functions     Functions for configuring the tcpl package
Hill model utilites     Functions to solve the Hill model
Load assay information
                        Functions for loading assay information
MC2_Methods             List of level 2 multiple-concentration
                        correction functions
MC3_Methods             List of level 3 multiple-concentration
                        normalization methods
MC5_Methods             Load list of level 5 multiple-concentration
                        cutoff methods
MC6_Methods             Load list of level 6 multiple-concentration
                        flag methods
Method functions        Functions for managing processing methods
Models                  Model objective functions
Query functions         Wrappers for sending queries and fetching
                        results
Register/update annotation
                        Functions for registering & updating annotation
                        information
SC1_Methods             List of level 1 single-concentration
                        normalization functions
SC2_Methods             List of level 2 single-concentration hit-call
                        functions
blineShift              Shift the baseline to 0
flareFunc               Calculate the weighted mean of a square to
                        detect plate flares
interlaceFunc           Calculate the weighted mean of a square to
                        detect interlace effect
is.odd                  Check for odd numbers
lu                      Abbreviation for 'length(unique(x))'
lw                      Abbreviation for 'length(which(x))'
mc1                     Perform level 1 multiple-concentration
                        processing
mc2                     Perform level 2 multiple-concentration
                        processing
mc3                     Perform level 3 multiple-concentration
                        processing
mc4                     Perform level 4 multiple-concentration
                        processing
mc5                     Perform level 5 multiple-concentration
                        processing
mc6                     Perform level 6 multiple-concentration
                        processing
registerMthd            Add a new analysis method
sc1                     Perform level 1 single-concentration processing
sc2                     Perform level 2 single-concentration processing
sink.reset              Reset all sinks
tcplAICProb             Calculate the AIC probabilities
tcplAddModel            Draw a tcpl Model onto an exisiting plot
tcplAppend              Append rows to a table
tcplCascade             Do a cascading delete on tcpl screening data
tcplCode2CASN           Convert chemical code to CAS Registry Number
tcplCytoPt              Calculate the cytotoxicity point based on the
                        "burst" endpoints
tcplDelete              Delete rows from tcpl databases
tcplFit                 Fit the data with the constant, hill, and
                        gain-loss models
tcplListFlds            Load the field names for a table
tcplLoadChem            Load sample/chemical information
tcplLoadClib            Load chemical library information
tcplLoadData            Load tcpl data
tcplLoadUnit            Load response units for assay endpoints
tcplMakeAeidPlts        Create a .pdf with dose-response plots
tcplPlotFitc            Plot the fit category tree
tcplPlotFits            Plot summary fits based on fit and
                        dose-response data
tcplPlotM4ID            Plot fit summary plot by m4id
tcplPlotPlate           Plot plate heatmap
tcplPrepOtpt            Map assay/chemcial ID values to annotation
                        information
tcplRun                 Perform data processing
tcplSubsetChid          Subset level 5 data to a single sample per
                        chemical
tcplVarMat              Create chemical by assay matrices
tcplWriteData           Write screening data into the tcpl databases
tcplWriteLvl0           Write level 0 screening data into the tcpl
                        databases
