Batch Processing, Modeling and Visualizing the Dose-Response of High-Throughput Screening Bioassay

Documentation for package ‘toxplot’ version 0.1.1

auc_hill_tcpl	function to calculate Area Under the Curve (AUC) of the hill model
demo_mc	Example multi-concentration screening data
demo_mc_norm	Normalized example multi-concentration screening data
fit_curve_tcpl	fit dose-resopnse curve using tcpl hill model
hill_model	hill mode in ToxCast tcpl package
log_abs_ec	calculate absolute EC_anything based on tcpl hill model
normalize_per_plate	normalize per plate
normalize_single_assay	normalize per plate (from single assay data)
plot_tcpl	Plot dose-resonse curves based on the tcpl hill model
plot_tcpl_minimal	Plot dose-resonse curves with minimal text annotation This funciton plots dose-response curve with minimal text annotation, no x and y axis label, 0 borders. Useful when need to present several plots together.
qc_per_plate	Quality-control metrics calculation
rank_tcpl	function to calculate ranking score, TAA, med_diff, EC values based on tcpl hill model
round_df	round digits of numbers
save_plot_pdf	save plots in pdf
summary_tcpl	function to summarize curve fitting results