Rcpp_model_BebopInPeps2-class
                        Compiled Stan model for BEBOP implementation in
                        PePS2 clinical trial
Rcpp_model_EffTox-class
                        Compiled Stan model for EffTox dose-finding
                        design
Rcpp_model_ThallHierachicalBinary-class
                        Compiled Stan model for Thall et al.'s
                        hierarchical Bayesian model for binary data
Rcpp_model_ThallHierarchicalBinary-class
                        Compiled Stan model for Thall et al.'s
                        hierarchical Bayesian model for binary data
efftox_analysis         Processed results of an EffTox dose-update
                        analysis
efftox_analysis_to_df   EffTox analysis to data.frame
efftox_contour_plot     Plot EffTox utility contours
efftox_dtps             Calculate dose-transition pathways for an
                        EffTox study
efftox_get_tox          Get the probability of toxicity for
                        probability-of-efficacy and utility pairs
efftox_parameters_demo
                        Get parameters to run the EffTox demo
efftox_params           Parameters to be passed to EffTox model in Stan
efftox_parse_outcomes   Parse a string of EffTox outcomes to binary
                        vector notation.
efftox_process          Process RStan samples from an EffTox model
efftox_simulate         Run EffTox simulations
efftox_solve_p          Calculate the p-index for EffTox utility
                        contours
efftox_superiority      Get dose-superiority matrix in EffTox
efftox_utility          Get the utility of efficacy & toxicity
                        probability pairs
efftox_utility_density_plot
                        Plot densities of EffTox dose utilities
model_BebopInPeps2      Stan model for BEBOP implementation in PePS2
                        clinical trial
model_EffTox            Stan model for EffTox dose-finding design
model_ThallHierachicalBinary
                        Stan model for Thall et al.'s hierarchical
                        Bayesian model for binary data
model_ThallHierarchicalBinary
                        Stan model for Thall et al.'s hierarchical
                        Bayesian model for binary data
peps2_get_data          Get data to run the PePS2 trial example
peps2_params            Parameters to be passed to 'BebopInPeps2' model
                        in Stan
peps2_process           Process RStan samples from a BEBOP model fit to
                        PePS2 data
peps2_run_sims          Run simulations of BEBOP in PePS2
ranBin2                 Sample pairs of correlated binary events
stan_files              Stan file locations
stanmodels              Stan models used by trialr
thallhierarchicalbinary_parameters_demo
                        Get parameters to run the demo of Thall
                        Hierarchical Binary model
thallhierarchicalbinary_params
                        Parameters to be passed to the
                        ThallHierachicalBinary model in Stan
trialr-package          Clinical Trial Designs in 'RStan'
