# Animal Movement Tools

## Documentation for package ‘amt’ version 0.0.5.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

A B C D E F G H I M N P R S T V

amt-package | amt: Animal Movement Tools

## -- A --

adjust_kappa | Adjust parameters
adjust_param | Adjust parameters
adjust_scale | Adjust parameters
adjust_shape | Adjust parameters
amt | amt: Animal Movement Tools
animal_sim | Simulated movement data of 1 animal.
as_bcpa | Coerce a track to other formats.
as_bcpa.track_xyt | Coerce a track to other formats.
as_ltraj | Coerce a track to other formats.
as_ltraj.track_xy | Coerce a track to other formats.
as_ltraj.track_xyt | Coerce a track to other formats.
as_move | Coerce a track to other formats.
as_move.track_xy | Coerce a track to other formats.
as_move.track_xyt | Coerce a track to other formats.
as_moveHMM | Coerce a track to other formats.
as_moveHMM.track_xy | Coerce a track to other formats.
as_rad | Converts angles to radians
as_sp | Coerce a track to other formats.
as_sp.steps_xy | Coerce a track to other formats.
as_track | Coerce to track
as_track.SpatialPoints | Coerce to track

## -- B --

bbox | Get bounding box of a track.
bbox.track_xy | Get bounding box of a track.

## -- C --

centroid | Calculate the centroid of a track.
centroid.track_xy | Calculate the centroid of a track.
coercion | Coerce a track to other formats.
coords | Coordinates of a track.
crs | Coordinate References System (CRS)
cumulative_ud | Calculate a cumulative UD
cumulative_ud.kde | Calculate a cumulative UD
cumulative_ud.RasterLayer | Calculate a cumulative UD
cum_dist | Movement metrics
cum_ud | Calculate a cumulative UD

## -- D --

deer | Relocations of 1 red deer
diff_x | Track Methods
diff_x.track_xy | Track Methods
diff_y | Track Methods
diff_y.track_xy | Track Methods
direction_abs | Functions to create and work with steps
direction_abs.track_xy | Functions to create and work with steps
direction_rel | Functions to create and work with steps
direction_rel.track_xy | Functions to create and work with steps
distance_to_center | Distance to center
distance_to_center.track_xy | Distance to center
distance_to_centers | Distance to center
distance_to_centers.track_xy | Distance to center
dist_cent | Distance to center

## -- E --

extract_covariates | Extract covariate values
extract_covariates.random_points | Extract covariate values
extract_covariates.steps_xy | Extract covariate values
extract_covariates.track_xy | Extract covariate values
extract_covariates_along | Extract covariate values
extract_covariates_along.steps_xy | Extract covariate values

## -- F --

filter_min_n_burst | Filter bursts by number of relocations
filter_min_n_burst.track_xy | Filter bursts by number of relocations
fit_clogit | Fit a conditional logistic regression
fit_issf | Fit a conditional logistic regression
fit_logit | Fit logistic regression
fit_rsf | Fit logistic regression
fit_sl_dist | Fit a statistical distribution to step lengths.
fit_sl_dist_base | Fit a statistical distribution to step lengths.
fit_ssf | Fit a conditional logistic regression
fit_ta_dist | Fit a statistical distribution to the turn angles of a track
fit_ta_dist_base | Fit a statistical distribution to the turn angles of a track
from | Duration of tracks
from.track_xyt | Duration of tracks
from_to | Duration of tracks
from_to.track_xyt | Duration of tracks

## -- G --

get_crs | Coordinate References System (CRS)
get_kappa | Get 'kappa'

## -- H --

habitat | Habitat of simulated data
habitat_kernel | Simulate UD from fitted SSF
has_crs | Coordinate References System (CRS)
hr | Home ranges
hr_area | Home ranges
hr_isopleths | Home ranges
hr_kde | Home ranges
hr_kde.track_xy | Home ranges
hr_kde_ref | Home ranges
hr_kde_ref.track_xy | Home ranges
hr_locoh_k | Home ranges
hr_locoh_k.track_xy | Home ranges
hr_mcp | Home ranges
hr_mcp.track_xy | Home ranges

## -- I --

inspect | Inspect a track
inspect.track_xy | Inspect a track
intensity_use | Movement metrics

## -- M --

make_track | Create a 'track_*'
mk_track | Create a 'track_*'
movement_kernel | Simulate UD from fitted SSF
movement_metrics | Movement metrics
msd | Movement metrics

## -- N --

nsd | Track Methods
nsd.track_xy | Track Methods

## -- P --

plot_sl | Plot step-length distribution

## -- R --

random_points | Generate random points
random_points.kde | Generate random points
random_points.mcp | Generate random points
random_points.track_xy | Generate random points
random_steps | Generate Random Steps
random_steps.steps_xy | Generate Random Steps
remove_capture | Removes Capture Effects
remove_capture_effect | Removes Capture Effects
remove_capture_effect.track_xyt | Removes Capture Effects

## -- S --

sh | Relocations of 1 red deer
sh_forest | Forest cover
simulate_tud | Simulate UD from fitted SSF
simulate_ud | Simulate UD from fitted SSF
sim_ud | Simulate UD from fitted SSF
sinuosity | Movement metrics
sl_distr | Step-length distribution
sl_distr.fit_clogit | Step-length distribution
sl_distr.list | Step-length distribution
sl_distr.random_steps | Step-length distribution
sl_params | Step lengths parameters
sl_params.fitdist | Step lengths parameters
sl_params.fit_clogit | Step lengths parameters
sl_params.random_steps | Step lengths parameters
sl_scale | Step lengths parameters
sl_shape | Step lengths parameters
speed | Speed
speed.track_xyt | Speed
steps | Functions to create and work with steps
steps.track_xy | Functions to create and work with steps
steps.track_xyt | Functions to create and work with steps
steps_by_burst | Functions to create and work with steps
steps_by_burst.track_xyt | Functions to create and work with steps
step_lengths | Functions to create and work with steps
step_lengths.track_xy | Functions to create and work with steps
straightness | Movement metrics
summarize_sampling_rate | Returns a summary of sampling rates
summarize_sampling_rate.track_xyt | Returns a summary of sampling rates

## -- T --

tac | Movement metrics
ta_distr | Turn angle distribution
ta_distr.fit_clogit | Turn angle distribution
ta_distr.list | Turn angle distribution
ta_distr.random_steps | Turn angle distribution
ta_kappa | Turn angle parameters
ta_params | Turn angle parameters
ta_params.fit_clogit | Turn angle parameters
ta_params.random_steps | Step lengths parameters
time_of_day | Time of the day when a fix was taken
time_of_day.steps_xyt | Time of the day when a fix was taken
time_of_day.track_xyt | Time of the day when a fix was taken
to | Duration of tracks
to.track_xyt | Duration of tracks
tot_dist | Movement metrics
track | Create a 'track_*'
track_methods | Track Methods
track_resample | Resample track
track_resample.track_xyt | Resample track
transform_coords | Transform CRS
transform_coords.track_xy | Transform CRS
transform_crs | Transform CRS

## -- V --

velocity | Track Methods
velocity.track_xyt | Track Methods