FDis                    Calculate functional dispersion (FDis)
MRD                     Calculate mean root distance
abundanceVector         Generate regional abundance vector
alphaMetricSims         Calculate alpha metrics under specified tree
                        and community parameters
arenaTest               Calculate SES of each observed metric + null
                        model combination
betaErrorChecker        Wrapper for summarizing error rates of beta
                        metric randomizations
betaErrorWrapper        Read in and calculate type I and II error rates
                        of a set of beta metric tests
betaLinker              Run spatial simulations, null and beta metric
                        calculations
betaMetricSims          Calculate beta metrics under specified tree and
                        community parameters
betaMetricsNnulls       Parallelized function that calculates beta
                        metrics on randomized matrices
betaMultiLinker         Run multiple simulations and calculations to
                        test beta metric + null performance
calcBetaMetrics         Calculate phylogenetic community structure beta
                        metrics
calcField               Calculate phylogenetic and trait fields
calcMetrics             Calculate phylogenetic community structure
                        metrics
centers                 Calculate weighted centroids
checkBetaMetrics        Confirm that the metric functions are in
                        suitable format
checkCDM                Confirm that a CDM will run
checkMetrics            Confirm that the metric functions are in
                        suitable format
checkNulls              Confirm that the null model functions are in
                        suitable format
checkSimulations        Confirm that the spatial simulation functions
                        are in suitable format
competitionArena        Simulate competitive exclusion over multiple
                        generations
defineBetaMetrics       Output all beta metrics as a list of named
                        functions
defineMetrics           Output all metrics as a list of named functions
defineNulls             Output all null models as a list of named
                        functions
defineSimulations       Output all spatial simulations as a list of
                        named functions
dispersalNull           Randomize community data matrix with dispersal
                        null model
distMRCA                Calculate plot-level distances to most recent
                        common ancestors
errorChecker            Wrapper for summarizing randomizations and
                        testing significance of observed metrics
evolveTraits            Evolve two traits up a tree
expectations            Generate expectations for null+metric
                        combinations
filteringArena          Simulate a community assembled according to
                        habitat filtering
killSome                Remove most closely related individuals
killSomeBig             Remove most closely related individuals for
                        large arenas
lengthNonZeros          Calculate the species richness of a vector from
                        a CDM
linker                  Run spatial simulations, null and metric
                        calculations to test metric + null performance
makeCDM                 Wrapper for creating a CDM from a spatial
                        simulation result
makeRoadMap             Create a road map for use in FDis-related
                        functions
metricPerformance       Summarize metric performance of a series of
                        summarized simulation results
metricsNnulls           Parallelized function that calculates metrics
                        on randomized matrices
modifiedMPD             Calculate different versions of
                        abundance-weighted MPD
multiCDM                Wrapper for deriving CDMs from the results of
                        multiple spatial simulations
multiLinker             Run multiple simulations and calculations to
                        test metric + null performance
newRegionalNull         Randomize community data matrix with second-gen
                        regional null model
nullPerformance         Summarize null model performance of a series of
                        summarized simulation results
observedBetaMetrics     Wrapper for prepping and calculating observed
                        beta metrics
observedMetrics         Wrapper for prepping and calculating observed
                        metrics
oldRegionalNull         Randomize community data matrix with regional
                        null model
phyloField              Calculate a species' phylogenetic field
plotContents            Identify individuals contained within a plot
plotOverall             Overall per simulation-null-metric plot test
plotPlacer              Randomly place plots in arena
plotPlotter             Plot simulated plots in arena
plotTest                Calculate if single, observed metrics deviate
                        beyond expectations
prepData                Prep data to test phylogenetic community
                        structure metrics
prepFieldData           Prep data to to calculate phylogenetic fields
prepNulls               Prep data for null randomizations
prepSimulations         Prep data for spatial simulations
pscCorr                 Calculate corrected PSC
randomArena             Generate a random spatial arena
readIn                  Read in the results of multiple
                        metric/null/simulation tests
reduceRandomizations    Reduce randomized results to a manageable list
                        of dataframes
reduceResults           Reduce results from multiLinker into a
                        manageable format
relativeCDM             Convert absolute abundance matrix to relative
                        abundance
runNulls                Randomize input CDM according to defined null
                        models
runSimulations          Run defined spatial simulations
sesField                Calculate a species' standardized trait field
sesIndiv                Summary statistics of SES results
sesOverall              Overall per simulation-null-metric SES test
sesPhyloField           Calculate a species' standardized trait field
sesTraitField           Calculate a species' standardized trait field
settleSome              Randomly settle individuals in a spatial arena
simulateComm            Generate a simulated community data matrix
summCorrs               Summarize correlations among metrics over a
                        result from a varyX function
summaries               Return summary statistics from a data frame of
                        randomized metric values
synthComm               Create synthetic community niche space
traitField              Calculate a species' trait field
varLandscape            Create landscapes with varying degrees of
                        heterogeneity
varyX                   Calculate alpha or beta metrics across a set of
                        parameters
