Electronic Health Record (EHR) Data Processing and Analysis Tool

Documentation for package ‘EHR’ version 0.3-1

EHR-package	Electronic Health Record (EHR) Data Processing and Analysis Tool
addLastDose	Add Lastdose Data
analysisPheWAS	Statistical Analysis for PheWAS
buildDose	Combine Dose Data
collapseDose	Collapse Dose Data
dataTransformation	Data Transformation
dd	dd
dd.baseline	dd.baseline
dd.baseline.small	dd.baseline.small
dd.small	dd.small
EHR	Electronic Health Record (EHR) Data Processing and Analysis Tool
extractMed	Extract medication information from clinical notes
freqNum	Convert Character Frequency to Numeric
lam_metadata	Example of Metadata for Lamotrigine Data
lam_mxr_parsed	Example of Lamotrigine Output from 'parseMedExtractR'
Logistf	Firth's penalized-likelihood logistic regression with more decimal places of p-value than 'logistf' function in the R package 'logistf'
makeDose	Make Dose Data
parseCLAMP	Parse CLAMP NLP Output
parseMedEx	Parse MedEx NLP Output
parseMedExtractR	Parse medExtractR NLP Output
parseMedXN	Parse MedXN NLP Output
processLastDose	Process and standardize extracted last dose times
readTransform	Read and Transform
stdzDose	Standardize Dose Entity
stdzDuration	Standardize Duration Entity
stdzFreq	Standardize Frequency Entity
stdzRoute	Standardize Route Entity
stdzStrength	Standardize Strength Entity
tac_lab	Example of Lab Time Data for Tacrolimus
tac_metadata	Example of Metadata for Tacrolimus Data
tac_mxr_parsed	Example of Tacrolimus Output from 'parseMedExtractR'
zeroOneTable	Make Zero One Contingency Tables