Package: rabhit
Type: Package
Title: Inference Tool for Antibody Haplotype
Version: 0.1.5
Authors@R: c(person("Ayelet", "Peres", role=c("aut","cre"), 
                    email="peresay@biu.ac.il"),
            person("Moriah", "Gidoni", role=c("aut"), 
                    email="moriah.cohen@biu.ac.il"),
             person("Gur", "Yaari", role=c("aut","cph"), 
                    email="gur.yaari@biu.ac.il"))
Description: Infers V-D-J haplotypes and gene deletions from AIRR-seq data, 
    based on IGHJ, IGHD or IGHV as anchor, by adapting a Bayesian framework.
    It also calculates a Bayes factor, a number that indicates the certainty level of the inference, for each haplotyped gene.
    Citation:
    Gidoni, et al (2019) <doi:10.1038/s41467-019-08489-3>.
    Peres and Gidoni, et al (2019) <doi:10.1093/bioinformatics/btz481>.
License: CC BY-SA 4.0
URL: https://yaarilab.bitbucket.io/RAbHIT/
BugReports: https://bitbucket.org/yaarilab/rabhit/issues
LazyData: true
BuildVignettes: true
VignetteBuilder: knitr
Encoding: UTF-8
Depends: R (>= 3.5.0), ggplot2 (>= 3.2.0)
Imports: dplyr (>= 1.0.0), reshape2 (>= 1.4.3), plotly (>= 4.7.1),
        graphics (>= 3.4.4), gtools (>= 3.5.0), cowplot (>= 0.9.1),
        stats (>= 3.4.4), dendextend (>= 1.9.0), data.table (>=
        1.12.2), plyr (>= 1.8.5), ggdendro (>= 0.1.20), gridExtra (>=
        2.3.0), alakazam (>= 1.0.0), tigger (>= 1.0.0), methods (>=
        3.4.4), htmlwidgets (>= 1.3.0), gtable (>= 0.3.0), rlang (>=
        0.4.0), RColorBrewer (>= 1.1.2), tidyr (>= 1.0.0), stringi (>=
        1.4.3), grid (>= 3.4.4), splitstackshape (>= 1.4.8), fastmatch
        (>= 1.1.0) , grDevices
Suggests: knitr, rmarkdown
RoxygenNote: 7.1.0
NeedsCompilation: no
Collate: 'Data.R' 'rabhit.R' 'internal_functions.R' 'functions.R'
        'graphic_functions.R' 'zzz.R'
Packaged: 2020-07-11 19:32:09 UTC; ayelet
Author: Ayelet Peres [aut, cre],
  Moriah Gidoni [aut],
  Gur Yaari [aut, cph]
Maintainer: Ayelet Peres <peresay@biu.ac.il>
Repository: CRAN
Date/Publication: 2020-07-11 22:40:02 UTC
Built: R 3.6.3; ; 2021-05-13 00:32:44 UTC; windows
