Warning: no access to tty (Bad file descriptor). Thus no job control in this shell. lmbwide.login complete +------------------------------------------------ LMB crystallography software CCP4 release 6.5 installed 12/01/2015 updated Feb 201 Phil Evans If you really want to use the older (6.4.0) version, edit your .login to "source /public/xtal/ccp4/xtal-6.4.0.login" and login again ------------------------------------------------------------------------------ phenix release 1.10 installed 9.9.15 Phil Evans Type "phenix &" to get GUI ------------------------------------------------------------------------------ sharp server is on hal:8082, Sharp version 2.8.2 Phil Evans/Roger Williams ------------------------------------------------------------------------------ coot now points to the very latest. Stable coot is available with old-coot ------------------------------------------------------------------------------ imosflm (1.0.7) and ipmosflm (7.0.9) May 2012 ------------------------------------------------------------------------------ qtmg or ccp4mg run the CCP4 molecular graphics program ------------------------------------------------------------------------------ MAIN 2014 Jan Löwe 10/14 ------------------------------------------------------------------------------ ************************************************** MRC image processing programs have moved. You are using image2010 by default. If you wish to use the frozen image2000 you need to : source /public/EM/image2000/com/image.login and source /public/EM/image2000/com/image.cshrc Jude Short (F46 x2039 jms@mrc-lmb.cam.ac.uk) 09.03.2011 ************************************************** === RELION MPI setup === + Number of MPI processes = 24 + Number of threads per MPI process = 6 + Total number of threads therefore = 144 + Master (0) runs on host = fmb144.lmb.internal + Slave 2 runs on host = fmb219.lmb.internal + Slave 1 runs on host = fmb104.lmb.internal + Slave 3 runs on host = fmb330.lmb.internal + Slave 5 runs on host = fmb333.lmb.internal + Slave 6 runs on host = fmb144.lmb.internal + Slave 4 runs on host = fmb304.lmb.internal + Slave 12 runs on host = fmb144.lmb.internal + Slave 18 runs on host = fmb144.lmb.internal + Slave 11 runs on host = fmb333.lmb.internal + Slave 8 runs on host = fmb219.lmb.internal + Slave 7 runs on host = fmb104.lmb.internal + Slave 9 runs on host = fmb330.lmb.internal + Slave 10 runs on host = fmb304.lmb.internal ================= + Slave 17 runs on host = fmb333.lmb.internal + Slave 14 runs on host = fmb219.lmb.internal + Slave 13 runs on host = fmb104.lmb.internal + Slave 15 runs on host = fmb330.lmb.internal + Slave 16 runs on host = fmb304.lmb.internal + Slave 21 runs on host = fmb330.lmb.internal + Slave 20 runs on host = fmb219.lmb.internal + Slave 19 runs on host = fmb104.lmb.internal + Slave 23 runs on host = fmb333.lmb.internal + Slave 22 runs on host = fmb304.lmb.internal Running in double precision. Estimating initial noise spectra 000/??? sec ~~(,_,"> [oo] 0.07/4.53 min ~~(,_,"> 0.10/3.40 min .~~(,_,"> 0.13/3.02 min ..~~(,_,"> 0.17/2.83 min ...~~(,_,"> 0.20/2.72 min ....~~(,_,"> 0.25/2.83 min .....~~(,_,"> 0.37/3.55 min ......~~(,_,"> 0.50/4.25 min .......~~(,_,"> 0.53/4.02 min .......~~(,_,"> 0.67/4.53 min ........~~(,_,"> 0.70/4.32 min .........~~(,_,"> 0.83/4.72 min ..........~~(,_,"> 0.90/4.70 min ...........~~(,_,"> 0.95/4.60 min ............~~(,_,"> 1.00/4.53 min .............~~(,_,"> 1.12/4.73 min ..............~~(,_,"> 1.28/5.13 min ...............~~(,_,"> 1.43/5.40 min ...............~~(,_,"> 1.48/5.30 min ................~~(,_,"> 1.52/5.15 min .................~~(,_,"> 1.55/5.02 min ..................~~(,_,"> 1.60/4.93 min ...................~~(,_,"> 1.63/4.82 min ....................~~(,_,"> 1.67/4.72 min .....................~~(,_,"> 1.70/4.62 min ......................~~(,_,"> 1.80/4.70 min ......................~~(,_,"> 1.83/4.62 min .......................~~(,_,"> 1.93/4.68 min ........................~~(,_,"> 1.97/4.60 min .........................~~(,_,"> 2.00/4.53 min ..........................~~(,_,"> 2.08/4.57 min ...........................~~(,_,"> 2.12/4.48 min ............................~~(,_,"> 2.23/4.60 min .............................~~(,_,"> 2.27/4.53 min ..............................~~(,_,"> 2.38/4.62 min ..............................~~(,_,"> 2.42/4.55 min ...............................~~(,_,"> 2.48/4.55 min ................................~~(,_,"> 2.52/4.50 min .................................~~(,_,"> 2.57/4.47 min ..................................~~(,_,"> 2.62/4.43 min ...................................~~(,_,"> 2.65/4.38 min ....................................~~(,_,"> 2.70/4.37 min .....................................~~(,_,"> 2.73/4.32 min .....................................~~(,_,"> 2.77/4.27 min ......................................~~(,_,"> 2.80/4.22 min .......................................~~(,_,"> 2.83/4.18 min ........................................~~(,_,"> 2.87/4.13 min .........................................~~(,_,"> 2.90/4.10 min ..........................................~~(,_,"> 2.93/4.07 min ...........................................~~(,_,"> 2.97/4.03 min ............................................~~(,_,"> 3.00/4.00 min .............................................~~(,_,"> 3.03/3.97 min .............................................~~(,_,"> 3.07/3.93 min ..............................................~~(,_,"> 3.10/3.90 min ...............................................~~(,_,"> 3.13/3.87 min ................................................~~(,_,"> 3.17/3.83 min .................................................~~(,_,"> 3.20/3.82 min ..................................................~~(,_,"> 3.28/3.83 min ...................................................~~(,_,"> 3.32/3.82 min ....................................................~~(,_,"> 3.35/3.78 min ....................................................~~(,_,"> 3.37/3.75 min .....................................................~~(,_,"> 3.40/3.72 min ......................................................~~(,_,"> 3.43/3.70 min .......................................................~~(,_,"> 3.47/3.68 min ........................................................~~(,_,"> 3.50/3.65 min .........................................................~~(,_,"> 3.53/3.63 min ..........................................................~~(,_,"> 3.57/3.62 min ...........................................................~~(,_,"> 3.58/3.58 min ............................................................~~(,_,"> Estimating accuracies in the orientational assignment ... 000/??? sec ~~(,_,"> [oo] 1/ 30 sec ..~~(,_,"> 1/ 15 sec ...~~(,_,"> 2/ 20 sec ......~~(,_,"> 2/ 15 sec .......~~(,_,"> 2/ 12 sec ..........~~(,_,"> 3/ 15 sec ...........~~(,_,"> 3/ 12 sec ..............~~(,_,"> 4/ 15 sec ...............~~(,_,"> 4/ 13 sec ..................~~(,_,"> 4/ 12 sec ...................~~(,_,"> 5/ 13 sec ......................~~(,_,"> 5/ 12 sec .......................~~(,_,"> 5/ 11 sec ..........................~~(,_,"> 5/ 10 sec ...........................~~(,_,"> 6/ 12 sec ..............................~~(,_,"> 6/ 11 sec ...............................~~(,_,"> 6/ 10 sec ..................................~~(,_,"> 7/ 11 sec ....................................~~(,_,"> 7/ 11 sec ......................................~~(,_,"> 7/ 10 sec .......................................~~(,_,"> 7/ 10 sec ..........................................~~(,_,"> 8/ 10 sec ............................................~~(,_,"> 8/ 10 sec ..............................................~~(,_,"> 8/ 10 sec ................................................~~(,_,"> 9/ 10 sec ..................................................~~(,_,"> 9/ 10 sec ....................................................~~(,_,"> 9/ 10 sec ......................................................~~(,_,"> 10/ 10 sec ........................................................~~(,_,"> 10/ 10 sec ..........................................................~~(,_,"> 10/ 10 sec ............................................................~~(,_,"> Auto-refine: Estimated accuracy angles= 1.58 degrees; offsets= 1.18 pixels CurrentResolution= 39.4545 Angstroms, which requires orientationSampling of at least 12.8571 degrees for a particle of diameter 350 Angstroms Oversampling= 0 NrHiddenVariableSamplingPoints= 5832 OrientationalSampling= 15 NrOrientations= 24 TranslationalSampling= 4 NrTranslations= 81 ============================= Oversampling= 1 NrHiddenVariableSamplingPoints= 373248 OrientationalSampling= 7.5 NrOrientations= 192 TranslationalSampling= 2 NrTranslations= 648 ============================= Estimated memory for expectation step > 0.514912 Gb, available memory = 24 Gb. Estimated memory for maximization step > 0.0223318 Gb, available memory = 24 Gb. Expectation iteration 1 of 5 000/??? sec ~~(,_,"> [oo] 0.08/1.80 min ..~~(,_,"> 0.10/1.67 min ...~~(,_,"> 0.12/1.58 min ....~~(,_,"> 0.13/1.53 min .....~~(,_,"> 0.17/1.67 min ......~~(,_,"> 0.18/1.60 min ......~~(,_,"> 0.20/1.57 min .......~~(,_,"> 0.22/1.53 min ........~~(,_,"> 0.25/1.62 min .........~~(,_,"> 0.27/1.58 min ..........~~(,_,"> 0.28/1.57 min ..........~~(,_,"> 0.30/1.53 min ...........~~(,_,"> 0.33/1.60 min ............~~(,_,"> 0.35/1.57 min .............~~(,_,"> 0.37/1.55 min ..............~~(,_,"> 0.40/1.60 min ..............~~(,_,"> 0.42/1.58 min ...............~~(,_,"> 0.43/1.57 min ................~~(,_,"> 0.45/1.55 min .................~~(,_,"> 0.48/1.60 min ..................~~(,_,"> 0.50/1.58 min ..................~~(,_,"> 0.53/1.62 min ...................~~(,_,"> 0.55/1.60 min ....................~~(,_,"> 0.55/1.53 min .....................~~(,_,"> 0.58/1.57 min ......................~~(,_,"> 0.60/1.57 min ......................~~(,_,"> 0.63/1.58 min .......................~~(,_,"> 0.65/1.58 min ........................~~(,_,"> 0.67/1.57 min .........................~~(,_,"> 0.68/1.55 min ..........................~~(,_,"> 0.72/1.58 min ...........................~~(,_,"> 0.73/1.57 min ...........................~~(,_,"> 0.75/1.57 min ............................~~(,_,"> 0.78/1.58 min .............................~~(,_,"> 0.80/1.58 min ..............................~~(,_,"> 0.82/1.57 min ...............................~~(,_,"> 0.83/1.57 min ...............................~~(,_,"> 0.87/1.58 min ................................~~(,_,"> 0.90/1.60 min .................................~~(,_,"> 0.90/1.57 min ..................................~~(,_,"> 0.92/1.57 min ...................................~~(,_,"> 0.95/1.58 min ...................................~~(,_,"> 0.97/1.57 min ....................................~~(,_,"> 0.98/1.57 min .....................................~~(,_,"> 1.00/1.55 min ......................................~~(,_,"> 1.03/1.58 min .......................................~~(,_,"> 1.05/1.57 min .......................................~~(,_,"> 1.07/1.57 min ........................................~~(,_,"> 1.10/1.58 min .........................................~~(,_,"> 1.12/1.57 min ..........................................~~(,_,"> 1.13/1.57 min ...........................................~~(,_,"> 1.15/1.57 min ...........................................~~(,_,"> 1.18/1.58 min ............................................~~(,_,"> 1.20/1.57 min .............................................~~(,_,"> 1.22/1.57 min ..............................................~~(,_,"> 1.25/1.58 min ...............................................~~(,_,"> 1.27/1.58 min ................................................~~(,_,"> 1.28/1.57 min ................................................~~(,_,"> 1.30/1.57 min .................................................~~(,_,"> 1.32/1.57 min ..................................................~~(,_,"> 1.35/1.57 min ...................................................~~(,_,"> 1.37/1.57 min ....................................................~~(,_,"> 1.38/1.57 min ....................................................~~(,_,"> 1.40/1.55 min .....................................................~~(,_,"> 1.43/1.57 min ......................................................~~(,_,"> 1.45/1.57 min .......................................................~~(,_,"> 1.47/1.57 min ........................................................~~(,_,"> 1.50/1.57 min ........................................................~~(,_,"> 1.52/1.57 min .........................................................~~(,_,"> 1.53/1.57 min ..........................................................~~(,_,"> 1.55/1.57 min ...........................................................~~(,_,"> 1.57/1.55 min ............................................................~~(,_,"> 1.63/1.63 min ............................................................~~(,_,"> Maximization ... 000/??? sec ~~(,_,"> [oo] 6/ 6 sec ............................................................~~(,_,"> Estimating accuracies in the orientational assignment ... 000/??? sec ~~(,_,"> [oo] 0/ 0 sec ..~~(,_,"> 0/ 0 sec ...~~(,_,"> 1/ 10 sec ......~~(,_,"> 1/ 7 sec .......~~(,_,"> 1/ 6 sec ..........~~(,_,"> 2/ 10 sec ...........~~(,_,"> 2/ 8 sec ..............~~(,_,"> 2/ 7 sec ...............~~(,_,"> 2/ 6 sec ..................~~(,_,"> 3/ 9 sec ...................~~(,_,"> 3/ 8 sec ......................~~(,_,"> 3/ 7 sec .......................~~(,_,"> 4/ 9 sec ..........................~~(,_,"> 4/ 8 sec ...........................~~(,_,"> 4/ 8 sec ..............................~~(,_,"> 5/ 9 sec ...............................~~(,_,"> 5/ 8 sec ..................................~~(,_,"> 5/ 8 sec ....................................~~(,_,"> 6/ 9 sec ......................................~~(,_,"> 6/ 9 sec .......................................~~(,_,"> 6/ 8 sec ..........................................~~(,_,"> 6/ 8 sec ............................................~~(,_,"> 7/ 9 sec ..............................................~~(,_,"> 7/ 8 sec ................................................~~(,_,"> 7/ 8 sec ..................................................~~(,_,"> 8/ 9 sec ....................................................~~(,_,"> 8/ 8 sec ......................................................~~(,_,"> 8/ 8 sec ........................................................~~(,_,"> 9/ 9 sec ..........................................................~~(,_,"> 9/ 9 sec ............................................................~~(,_,"> Auto-refine: Estimated accuracy angles= 2.16 degrees; offsets= 1.52 pixels CurrentResolution= 39.4545 Angstroms, which requires orientationSampling of at least 12.8571 degrees for a particle of diameter 350 Angstroms Oversampling= 0 NrHiddenVariableSamplingPoints= 5832 OrientationalSampling= 15 NrOrientations= 24 TranslationalSampling= 4 NrTranslations= 81 ============================= Oversampling= 1 NrHiddenVariableSamplingPoints= 373248 OrientationalSampling= 7.5 NrOrientations= 192 TranslationalSampling= 2 NrTranslations= 648 ============================= Estimated memory for expectation step > 0.514912 Gb, available memory = 24 Gb. Estimated memory for maximization step > 0.0223318 Gb, available memory = 24 Gb. Expectation iteration 2 of 5 000/??? sec ~~(,_,"> [oo] 0.13/2.88 min ..~~(,_,"> 0.15/2.50 min ...~~(,_,"> 0.17/2.27 min ....~~(,_,"> 0.20/2.30 min .....~~(,_,"> 0.27/2.67 min ......~~(,_,"> 0.28/2.48 min ......~~(,_,"> 0.35/2.75 min .......~~(,_,"> 0.38/2.72 min ........~~(,_,"> 0.42/2.70 min .........~~(,_,"> 0.43/2.58 min ..........~~(,_,"> 0.50/2.75 min ..........~~(,_,"> 0.52/2.65 min ...........~~(,_,"> 0.53/2.57 min ............~~(,_,"> 0.60/2.70 min .............~~(,_,"> 0.63/2.68 min ..............~~(,_,"> 0.65/2.62 min ..............~~(,_,"> 0.70/2.67 min ...............~~(,_,"> 0.73/2.67 min ................~~(,_,"> 0.77/2.65 min .................~~(,_,"> 0.93/3.08 min ..................~~(,_,"> 0.95/3.00 min ..................~~(,_,"> 0.97/2.93 min ...................~~(,_,"> 1.03/3.02 min ....................~~(,_,"> 1.07/2.98 min .....................~~(,_,"> 1.10/2.97 min ......................~~(,_,"> 1.13/2.95 min ......................~~(,_,"> 1.17/2.93 min .......................~~(,_,"> 1.20/2.92 min ........................~~(,_,"> 1.25/2.95 min .........................~~(,_,"> 1.28/2.93 min ..........................~~(,_,"> 1.30/2.88 min ...........................~~(,_,"> 1.35/2.90 min ...........................~~(,_,"> 1.38/2.90 min ............................~~(,_,"> 1.43/2.92 min .............................~~(,_,"> 1.47/2.90 min ..............................~~(,_,"> 1.48/2.87 min ...............................~~(,_,"> 1.52/2.85 min ...............................~~(,_,"> 1.57/2.87 min ................................~~(,_,"> 1.60/2.87 min .................................~~(,_,"> 1.63/2.85 min ..................................~~(,_,"> 1.67/2.85 min ...................................~~(,_,"> 1.70/2.83 min ...................................~~(,_,"> 1.75/2.85 min ....................................~~(,_,"> 1.78/2.85 min .....................................~~(,_,"> 1.80/2.82 min ......................................~~(,_,"> 1.83/2.80 min .......................................~~(,_,"> 1.88/2.82 min .......................................~~(,_,"> 1.92/2.82 min ........................................~~(,_,"> 1.93/2.78 min .........................................~~(,_,"> 1.98/2.80 min ..........................................~~(,_,"> 2.02/2.80 min ...........................................~~(,_,"> 2.07/2.82 min ...........................................~~(,_,"> 2.12/2.83 min ............................................~~(,_,"> 2.13/2.80 min .............................................~~(,_,"> 2.17/2.80 min ..............................................~~(,_,"> 2.20/2.78 min ...............................................~~(,_,"> 2.25/2.80 min ................................................~~(,_,"> 2.28/2.80 min ................................................~~(,_,"> 2.30/2.77 min .................................................~~(,_,"> 2.35/2.78 min ..................................................~~(,_,"> 2.38/2.78 min ...................................................~~(,_,"> 2.43/2.80 min ....................................................~~(,_,"> 2.45/2.77 min ....................................................~~(,_,"> 2.48/2.77 min .....................................................~~(,_,"> 2.52/2.77 min ......................................................~~(,_,"> 2.57/2.78 min .......................................................~~(,_,"> 2.60/2.77 min ........................................................~~(,_,"> 2.62/2.75 min ........................................................~~(,_,"> 2.65/2.75 min .........................................................~~(,_,"> 2.70/2.77 min ..........................................................~~(,_,"> 2.73/2.75 min ...........................................................~~(,_,"> 2.75/2.73 min ............................................................~~(,_,"> 2.87/2.87 min ............................................................~~(,_,"> Maximization ... 000/??? sec ~~(,_,"> [oo] 7/ 7 sec ............................................................~~(,_,"> Estimating accuracies in the orientational assignment ... 000/??? sec ~~(,_,"> [oo] 0/ 0 sec ..~~(,_,"> 1/ 15 sec ...~~(,_,"> 1/ 10 sec ......~~(,_,"> 1/ 7 sec .......~~(,_,"> 2/ 12 sec ..........~~(,_,"> 2/ 10 sec ...........~~(,_,"> 3/ 12 sec ..............~~(,_,"> 3/ 11 sec ...............~~(,_,"> 3/ 10 sec ..................~~(,_,"> 4/ 12 sec ...................~~(,_,"> 4/ 10 sec ......................~~(,_,"> 4/ 10 sec .......................~~(,_,"> 5/ 11 sec ..........................~~(,_,"> 5/ 10 sec ...........................~~(,_,"> 5/ 10 sec ..............................~~(,_,"> 5/ 9 sec ...............................~~(,_,"> 6/ 10 sec ..................................~~(,_,"> 6/ 10 sec ....................................~~(,_,"> 6/ 9 sec ......................................~~(,_,"> 7/ 10 sec .......................................~~(,_,"> 7/ 10 sec ..........................................~~(,_,"> 7/ 9 sec ............................................~~(,_,"> 8/ 10 sec ..............................................~~(,_,"> 8/ 10 sec ................................................~~(,_,"> 8/ 9 sec ..................................................~~(,_,"> 8/ 9 sec ....................................................~~(,_,"> 9/ 10 sec ......................................................~~(,_,"> 9/ 9 sec ........................................................~~(,_,"> 9/ 9 sec ..........................................................~~(,_,"> 10/ 10 sec ............................................................~~(,_,"> Auto-refine: Estimated accuracy angles= 1.18 degrees; offsets= 0.83 pixels CurrentResolution= 33.3846 Angstroms, which requires orientationSampling of at least 10.9091 degrees for a particle of diameter 350 Angstroms Oversampling= 0 NrHiddenVariableSamplingPoints= 5832 OrientationalSampling= 15 NrOrientations= 24 TranslationalSampling= 4 NrTranslations= 81 ============================= Oversampling= 1 NrHiddenVariableSamplingPoints= 373248 OrientationalSampling= 7.5 NrOrientations= 192 TranslationalSampling= 2 NrTranslations= 648 ============================= Estimated memory for expectation step > 0.639387 Gb, available memory = 24 Gb. Estimated memory for maximization step > 0.0290483 Gb, available memory = 24 Gb. Expectation iteration 3 of 5 000/??? sec ~~(,_,"> [oo] 0.17/3.60 min ..~~(,_,"> 0.18/3.07 min ...~~(,_,"> 0.20/2.73 min ....~~(,_,"> 0.25/2.88 min .....~~(,_,"> 0.33/3.33 min ......~~(,_,"> 0.37/3.22 min ......~~(,_,"> 0.38/3.02 min .......~~(,_,"> 0.48/3.43 min ........~~(,_,"> 0.50/3.25 min .........~~(,_,"> 0.53/3.18 min ..........~~(,_,"> 0.65/3.58 min ..........~~(,_,"> 0.67/3.42 min ...........~~(,_,"> 0.70/3.37 min ............~~(,_,"> 0.77/3.47 min .............~~(,_,"> 0.83/3.55 min ..............~~(,_,"> 0.85/3.42 min ..............~~(,_,"> 0.90/3.43 min ...............~~(,_,"> 0.95/3.45 min ................~~(,_,"> 1.03/3.57 min .................~~(,_,"> 1.05/3.47 min ..................~~(,_,"> 1.08/3.43 min ..................~~(,_,"> 1.18/3.58 min ...................~~(,_,"> 1.20/3.50 min ....................~~(,_,"> 1.23/3.47 min .....................~~(,_,"> 1.28/3.47 min ......................~~(,_,"> 1.38/3.60 min ......................~~(,_,"> 1.40/3.53 min .......................~~(,_,"> 1.43/3.48 min ........................~~(,_,"> 1.52/3.58 min .........................~~(,_,"> 1.55/3.55 min ..........................~~(,_,"> 1.58/3.52 min ...........................~~(,_,"> 1.63/3.52 min ...........................~~(,_,"> 1.73/3.63 min ............................~~(,_,"> 1.75/3.57 min .............................~~(,_,"> 1.78/3.53 min ..............................~~(,_,"> 1.88/3.63 min ...............................~~(,_,"> 1.93/3.63 min ...............................~~(,_,"> 1.95/3.57 min ................................~~(,_,"> 2.02/3.60 min .................................~~(,_,"> 2.08/3.63 min ..................................~~(,_,"> 2.12/3.62 min ...................................~~(,_,"> 2.13/3.57 min ...................................~~(,_,"> 2.23/3.65 min ....................................~~(,_,"> 2.30/3.67 min .....................................~~(,_,"> 2.30/3.60 min ......................................~~(,_,"> 2.35/3.60 min .......................................~~(,_,"> 2.45/3.67 min .......................................~~(,_,"> 2.47/3.63 min ........................................~~(,_,"> 2.48/3.58 min .........................................~~(,_,"> 2.58/3.65 min ..........................................~~(,_,"> 2.62/3.63 min ...........................................~~(,_,"> 2.67/3.63 min ...........................................~~(,_,"> 2.70/3.62 min ............................................~~(,_,"> 2.78/3.65 min .............................................~~(,_,"> 2.82/3.63 min ..............................................~~(,_,"> 2.85/3.62 min ...............................................~~(,_,"> 2.90/3.62 min ................................................~~(,_,"> 2.95/3.62 min ................................................~~(,_,"> 2.98/3.60 min .................................................~~(,_,"> 3.03/3.60 min ..................................................~~(,_,"> 3.08/3.60 min ...................................................~~(,_,"> 3.13/3.60 min ....................................................~~(,_,"> 3.17/3.58 min ....................................................~~(,_,"> 3.27/3.65 min .....................................................~~(,_,"> 3.28/3.62 min ......................................................~~(,_,"> 3.33/3.62 min .......................................................~~(,_,"> 3.38/3.62 min ........................................................~~(,_,"> 3.42/3.60 min ........................................................~~(,_,"> 3.48/3.62 min .........................................................~~(,_,"> 3.52/3.60 min ..........................................................~~(,_,"> 3.57/3.60 min ...........................................................~~(,_,"> 3.62/3.60 min ............................................................~~(,_,"> 3.72/3.72 min ............................................................~~(,_,"> Maximization ... 000/??? sec ~~(,_,"> [oo] 6/ 6 sec ............................................................~~(,_,"> Estimating accuracies in the orientational assignment ... 000/??? sec ~~(,_,"> [oo] 1/ 30 sec ..~~(,_,"> 1/ 15 sec ...~~(,_,"> 2/ 20 sec ......~~(,_,"> 2/ 15 sec .......~~(,_,"> 3/ 18 sec ..........~~(,_,"> 3/ 15 sec ...........~~(,_,"> 3/ 12 sec ..............~~(,_,"> 4/ 15 sec ...............~~(,_,"> 4/ 13 sec ..................~~(,_,"> 5/ 15 sec ...................~~(,_,"> 5/ 13 sec ......................~~(,_,"> 5/ 12 sec .......................~~(,_,"> 6/ 13 sec ..........................~~(,_,"> 6/ 12 sec ...........................~~(,_,"> 6/ 12 sec ..............................~~(,_,"> 6/ 11 sec ...............................~~(,_,"> 7/ 12 sec ..................................~~(,_,"> 7/ 11 sec ....................................~~(,_,"> 7/ 11 sec ......................................~~(,_,"> 8/ 12 sec .......................................~~(,_,"> 8/ 11 sec ..........................................~~(,_,"> 8/ 10 sec ............................................~~(,_,"> 8/ 10 sec ..............................................~~(,_,"> 9/ 11 sec ................................................~~(,_,"> 9/ 10 sec ..................................................~~(,_,"> 9/ 10 sec ....................................................~~(,_,"> 10/ 11 sec ......................................................~~(,_,"> 10/ 10 sec ........................................................~~(,_,"> 10/ 10 sec ..........................................................~~(,_,"> 10/ 10 sec ............................................................~~(,_,"> Auto-refine: Estimated accuracy angles= 0.81 degrees; offsets= 0.59 pixels CurrentResolution= 31 Angstroms, which requires orientationSampling of at least 10 degrees for a particle of diameter 350 Angstroms Oversampling= 0 NrHiddenVariableSamplingPoints= 5832 OrientationalSampling= 15 NrOrientations= 24 TranslationalSampling= 4 NrTranslations= 81 ============================= Oversampling= 1 NrHiddenVariableSamplingPoints= 373248 OrientationalSampling= 7.5 NrOrientations= 192 TranslationalSampling= 2 NrTranslations= 648 ============================= Estimated memory for expectation step > 0.710332 Gb, available memory = 24 Gb. Estimated memory for maximization step > 0.0328604 Gb, available memory = 24 Gb. Expectation iteration 4 of 5 000/??? sec ~~(,_,"> [oo] 0.22/4.68 min ..~~(,_,"> 0.23/3.90 min ...~~(,_,"> 0.27/3.63 min ....~~(,_,"> 0.30/3.47 min .....~~(,_,"> 0.43/4.33 min ......~~(,_,"> 0.47/4.10 min ......~~(,_,"> 0.52/4.07 min .......~~(,_,"> 0.57/4.03 min ........~~(,_,"> 0.65/4.22 min .........~~(,_,"> 0.68/4.08 min ..........~~(,_,"> 0.75/4.13 min ..........~~(,_,"> 0.82/4.20 min ...........~~(,_,"> 0.87/4.17 min ............~~(,_,"> 0.92/4.13 min .............~~(,_,"> 1.02/4.33 min ..............~~(,_,"> 1.07/4.28 min ..............~~(,_,"> 1.10/4.20 min ...............~~(,_,"> 1.18/4.30 min ................~~(,_,"> 1.23/4.27 min .................~~(,_,"> 1.30/4.30 min ..................~~(,_,"> 1.35/4.27 min ..................~~(,_,"> 1.40/4.25 min ...................~~(,_,"> 1.43/4.18 min ....................~~(,_,"> 1.53/4.30 min .....................~~(,_,"> 1.57/4.23 min ......................~~(,_,"> 1.65/4.30 min ......................~~(,_,"> 1.73/4.37 min .......................~~(,_,"> 1.75/4.27 min ........................~~(,_,"> 1.80/4.25 min .........................~~(,_,"> 1.88/4.30 min ..........................~~(,_,"> 1.93/4.28 min ...........................~~(,_,"> 1.97/4.23 min ...........................~~(,_,"> 2.03/4.25 min ............................~~(,_,"> 2.12/4.30 min .............................~~(,_,"> 2.17/4.30 min ..............................~~(,_,"> 2.18/4.22 min ...............................~~(,_,"> 2.30/4.33 min ...............................~~(,_,"> 2.35/4.32 min ................................~~(,_,"> 2.38/4.27 min .................................~~(,_,"> 2.45/4.28 min ..................................~~(,_,"> 2.53/4.33 min ...................................~~(,_,"> 2.58/4.32 min ...................................~~(,_,"> 2.60/4.25 min ....................................~~(,_,"> 2.68/4.28 min .....................................~~(,_,"> 2.77/4.33 min ......................................~~(,_,"> 2.78/4.27 min .......................................~~(,_,"> 2.83/4.25 min .......................................~~(,_,"> 2.95/4.33 min ........................................~~(,_,"> 2.98/4.30 min .........................................~~(,_,"> 3.02/4.27 min ..........................................~~(,_,"> 3.08/4.28 min ...........................................~~(,_,"> 3.17/4.32 min ...........................................~~(,_,"> 3.18/4.25 min ............................................~~(,_,"> 3.25/4.27 min .............................................~~(,_,"> 3.35/4.33 min ..............................................~~(,_,"> 3.37/4.27 min ...............................................~~(,_,"> 3.40/4.25 min ................................................~~(,_,"> 3.50/4.30 min ................................................~~(,_,"> 3.57/4.30 min .................................................~~(,_,"> 3.58/4.25 min ..................................................~~(,_,"> 3.65/4.27 min ...................................................~~(,_,"> 3.73/4.30 min ....................................................~~(,_,"> 3.78/4.28 min ....................................................~~(,_,"> 3.82/4.27 min .....................................................~~(,_,"> 3.88/4.27 min ......................................................~~(,_,"> 3.95/4.28 min .......................................................~~(,_,"> 4.00/4.27 min ........................................................~~(,_,"> 4.07/4.28 min ........................................................~~(,_,"> 4.12/4.27 min .........................................................~~(,_,"> 4.17/4.27 min ..........................................................~~(,_,"> 4.23/4.27 min ...........................................................~~(,_,"> 4.28/4.27 min ............................................................~~(,_,"> 4.45/4.45 min ............................................................~~(,_,"> Maximization ... 000/??? sec ~~(,_,"> [oo] 7/ 7 sec ............................................................~~(,_,"> Estimating accuracies in the orientational assignment ... 000/??? sec ~~(,_,"> [oo] 1/ 30 sec ..~~(,_,"> 2/ 30 sec ...~~(,_,"> 3/ 30 sec ......~~(,_,"> 3/ 22 sec .......~~(,_,"> 4/ 24 sec ..........~~(,_,"> 5/ 25 sec ...........~~(,_,"> 5/ 21 sec ..............~~(,_,"> 6/ 22 sec ...............~~(,_,"> 7/ 23 sec ..................~~(,_,"> 8/ 24 sec ...................~~(,_,"> 8/ 21 sec ......................~~(,_,"> 9/ 22 sec .......................~~(,_,"> 9/ 20 sec ..........................~~(,_,"> 10/ 21 sec ...........................~~(,_,"> 10/ 20 sec ..............................~~(,_,"> 11/ 20 sec ...............................~~(,_,"> 11/ 19 sec ..................................~~(,_,"> 11/ 18 sec ....................................~~(,_,"> 12/ 18 sec ......................................~~(,_,"> 12/ 18 sec .......................................~~(,_,"> 13/ 18 sec ..........................................~~(,_,"> 13/ 17 sec ............................................~~(,_,"> 14/ 18 sec ..............................................~~(,_,"> 14/ 17 sec ................................................~~(,_,"> 15/ 18 sec ..................................................~~(,_,"> 15/ 17 sec ....................................................~~(,_,"> 16/ 17 sec ......................................................~~(,_,"> 16/ 17 sec ........................................................~~(,_,"> 17/ 17 sec ..........................................................~~(,_,"> 17/ 17 sec ............................................................~~(,_,"> Auto-refine: Estimated accuracy angles= 0.73 degrees; offsets= 0.53 pixels CurrentResolution= 21.7 Angstroms, which requires orientationSampling of at least 7.05882 degrees for a particle of diameter 350 Angstroms Oversampling= 0 NrHiddenVariableSamplingPoints= 5832 OrientationalSampling= 15 NrOrientations= 24 TranslationalSampling= 4 NrTranslations= 81 ============================= Oversampling= 1 NrHiddenVariableSamplingPoints= 373248 OrientationalSampling= 7.5 NrOrientations= 192 TranslationalSampling= 2 NrTranslations= 648 ============================= Estimated memory for expectation step > 1.27401 Gb, available memory = 24 Gb. Estimated memory for maximization step > 0.0628977 Gb, available memory = 24 Gb. Expectation iteration 5 of 5 000/??? sec ~~(,_,"> [oo] 0.37/7.93 min ..~~(,_,"> 0.42/6.98 min ...~~(,_,"> 0.48/6.60 min ....~~(,_,"> 0.52/5.97 min .....~~(,_,"> 0.85/8.50 min ......~~(,_,"> 0.92/8.07 min ......~~(,_,"> 1.03/8.13 min .......~~(,_,"> 1.23/8.78 min ........~~(,_,"> 1.33/8.67 min .........~~(,_,"> 1.42/8.47 min ..........~~(,_,"> 1.55/8.57 min ..........~~(,_,"> 1.78/9.17 min ...........~~(,_,"> 1.85/8.90 min ............~~(,_,"> 1.98/8.97 min .............~~(,_,"> 2.12/9.02 min ..............~~(,_,"> 2.27/9.13 min ..............~~(,_,"> 2.42/9.23 min ...............~~(,_,"> 2.52/9.15 min ................~~(,_,"> 2.63/9.12 min .................~~(,_,"> 2.82/9.32 min ..................~~(,_,"> 2.88/9.13 min ..................~~(,_,"> 2.98/9.07 min ...................~~(,_,"> 3.17/9.25 min ....................~~(,_,"> 3.27/9.17 min .....................~~(,_,"> 3.40/9.20 min ......................~~(,_,"> 3.57/9.32 min ......................~~(,_,"> 3.67/9.25 min .......................~~(,_,"> 3.77/9.18 min ........................~~(,_,"> 4.00/9.45 min .........................~~(,_,"> 4.03/9.23 min ..........................~~(,_,"> 4.17/9.25 min ...........................~~(,_,"> 4.38/9.45 min ...........................~~(,_,"> 4.48/9.40 min ............................~~(,_,"> 4.57/9.30 min .............................~~(,_,"> 4.70/9.32 min ..............................~~(,_,"> 4.82/9.30 min ...............................~~(,_,"> 5.00/9.42 min ...............................~~(,_,"> 5.12/9.40 min ................................~~(,_,"> 5.17/9.25 min .................................~~(,_,"> 5.45/9.53 min ..................................~~(,_,"> 5.50/9.40 min ...................................~~(,_,"> 5.58/9.33 min ...................................~~(,_,"> 5.80/9.48 min ....................................~~(,_,"> 5.93/9.48 min .....................................~~(,_,"> 5.97/9.33 min ......................................~~(,_,"> 6.23/9.55 min .......................................~~(,_,"> 6.30/9.47 min .......................................~~(,_,"> 6.47/9.52 min ........................................~~(,_,"> 6.48/9.35 min .........................................~~(,_,"> 6.68/9.47 min ..........................................~~(,_,"> 6.83/9.50 min ...........................................~~(,_,"> 6.97/9.50 min ...........................................~~(,_,"> 7.05/9.43 min ............................................~~(,_,"> 7.22/9.50 min .............................................~~(,_,"> 7.38/9.55 min ..............................................~~(,_,"> 7.50/9.53 min ...............................................~~(,_,"> 7.57/9.45 min ................................................~~(,_,"> 7.65/9.40 min ................................................~~(,_,"> 7.92/9.57 min .................................................~~(,_,"> 8.02/9.53 min ..................................................~~(,_,"> 8.10/9.48 min ...................................................~~(,_,"> 8.27/9.52 min ....................................................~~(,_,"> 8.42/9.55 min ....................................................~~(,_,"> 8.55/9.55 min .....................................................~~(,_,"> 8.63/9.50 min ......................................................~~(,_,"> 8.78/9.53 min .......................................................~~(,_,"> 8.93/9.55 min ........................................................~~(,_,"> 9.02/9.50 min ........................................................~~(,_,"> 9.15/9.50 min .........................................................~~(,_,"> 9.37/9.60 min ..........................................................~~(,_,"> 9.43/9.53 min ...........................................................~~(,_,"> 9.53/9.50 min ............................................................~~(,_,"> 9.88/9.88 min ............................................................~~(,_,"> Maximization ... 000/??? sec ~~(,_,"> [oo] 11/ 11 sec ............................................................~~(,_,">