Warning: no access to tty (Bad file descriptor). Thus no job control in this shell. lmbwide.login complete +------------------------------------------------ LMB crystallography software CCP4 release 6.5 installed 12/01/2015 updated Feb 201 Phil Evans If you really want to use the older (6.4.0) version, edit your .login to "source /public/xtal/ccp4/xtal-6.4.0.login" and login again ------------------------------------------------------------------------------ phenix release 1.10 installed 9.9.15 Phil Evans Type "phenix &" to get GUI ------------------------------------------------------------------------------ sharp server is on hal:8082, Sharp version 2.8.2 Phil Evans/Roger Williams ------------------------------------------------------------------------------ coot now points to the very latest. Stable coot is available with old-coot ------------------------------------------------------------------------------ imosflm (1.0.7) and ipmosflm (7.0.9) May 2012 ------------------------------------------------------------------------------ qtmg or ccp4mg run the CCP4 molecular graphics program ------------------------------------------------------------------------------ MAIN 2014 Jan Löwe 10/14 ------------------------------------------------------------------------------ ************************************************** MRC image processing programs have moved. You are using image2010 by default. If you wish to use the frozen image2000 you need to : source /public/EM/image2000/com/image.login and source /public/EM/image2000/com/image.cshrc Jude Short (F46 x2039 jms@mrc-lmb.cam.ac.uk) 09.03.2011 ************************************************** === RELION MPI setup === + Number of MPI processes = 12 + Number of threads per MPI process = 6 + Total number of threads therefore = 72 + Master (0) runs on host = fmb330.lmb.internal + Slave 3 runs on host = fmb330.lmb.internal + Slave 2 runs on host = fmb333.lmb.internal + Slave 6 runs on host = fmb330.lmb.internal ================= + Slave 9 runs on host = fmb330.lmb.internal + Slave 5 runs on host = fmb333.lmb.internal + Slave 8 runs on host = fmb333.lmb.internal + Slave 4 runs on host = fmb304.lmb.internal + Slave 11 runs on host = fmb333.lmb.internal + Slave 7 runs on host = fmb304.lmb.internal + Slave 1 runs on host = fmb304.lmb.internal + Slave 10 runs on host = fmb304.lmb.internal Running in double precision. Estimating accuracies in the orientational assignment ... 000/??? sec ~~(,_,"> [oo] 1/ 30 sec ..~~(,_,"> 3/ 45 sec ...~~(,_,"> 4/ 40 sec ......~~(,_,"> 6/ 45 sec .......~~(,_,"> 7/ 42 sec ..........~~(,_,"> 8/ 40 sec ...........~~(,_,"> 9/ 38 sec ..............~~(,_,"> 11/ 41 sec ...............~~(,_,"> 13/ 43 sec ..................~~(,_,"> 14/ 42 sec ...................~~(,_,"> 14/ 38 sec ......................~~(,_,"> 15/ 37 sec .......................~~(,_,"> 16/ 36 sec ..........................~~(,_,"> 17/ 36 sec ...........................~~(,_,"> 18/ 36 sec ..............................~~(,_,"> 19/ 35 sec ...............................~~(,_,"> 20/ 35 sec ..................................~~(,_,"> 21/ 35 sec ....................................~~(,_,"> 22/ 34 sec ......................................~~(,_,"> 23/ 34 sec .......................................~~(,_,"> 24/ 34 sec ..........................................~~(,_,"> 25/ 34 sec ............................................~~(,_,"> 26/ 33 sec ..............................................~~(,_,"> 27/ 33 sec ................................................~~(,_,"> 28/ 33 sec ..................................................~~(,_,"> 29/ 33 sec ....................................................~~(,_,"> 30/ 33 sec ......................................................~~(,_,"> 31/ 33 sec ........................................................~~(,_,"> 32/ 33 sec ..........................................................~~(,_,"> 33/ 33 sec ............................................................~~(,_,"> Auto-refine: Estimated accuracy angles= 0.5 degrees; offsets= 0.38 pixels CurrentResolution= 15.5 Angstroms, which requires orientationSampling of at least 5.07042 degrees for a particle of diameter 350 Angstroms Oversampling= 0 NrHiddenVariableSamplingPoints= 2079 OrientationalSampling= 3.75 NrOrientations= 21 TranslationalSampling= 1 NrTranslations= 33 ============================= Oversampling= 1 NrHiddenVariableSamplingPoints= 133056 OrientationalSampling= 1.875 NrOrientations= 168 TranslationalSampling= 0.5 NrTranslations= 264 ============================= Estimated memory for expectation step > 1.11478 Gb, available memory = 24 Gb. Estimated memory for maximization step > 0.116198 Gb, available memory = 24 Gb. Expectation iteration 11 of 15 000/??? sec ~~(,_,"> [oo] 0.25/10.83 min .~~(,_,"> 0.37/10.03 min ..~~(,_,"> 0.57/11.33 min ...~~(,_,"> 0.72/11.28 min ...~~(,_,"> 0.97/12.57 min ....~~(,_,"> 1.07/11.80 min .....~~(,_,"> 1.32/12.67 min ......~~(,_,"> 1.47/12.50 min .......~~(,_,"> 1.68/12.87 min .......~~(,_,"> 1.83/12.70 min ........~~(,_,"> 2.07/13.10 min .........~~(,_,"> 2.28/13.33 min ..........~~(,_,"> 2.35/12.72 min ...........~~(,_,"> 2.62/13.20 min ...........~~(,_,"> 2.82/13.30 min ............~~(,_,"> 2.92/12.95 min .............~~(,_,"> 3.13/13.13 min ..............~~(,_,"> 3.30/13.08 min ...............~~(,_,"> 3.53/13.30 min ...............~~(,_,"> 3.65/13.08 min ................~~(,_,"> 3.83/13.10 min .................~~(,_,"> 4.05/13.23 min ..................~~(,_,"> 4.23/13.25 min ...................~~(,_,"> 4.47/13.42 min ...................~~(,_,"> 4.57/13.18 min ....................~~(,_,"> 4.75/13.20 min .....................~~(,_,"> 4.97/13.30 min ......................~~(,_,"> 5.15/13.32 min .......................~~(,_,"> 5.28/13.20 min .......................~~(,_,"> 5.52/13.33 min ........................~~(,_,"> 5.73/13.42 min .........................~~(,_,"> 5.87/13.32 min ..........................~~(,_,"> 6.03/13.28 min ...........................~~(,_,"> 6.25/13.37 min ............................~~(,_,"> 6.45/13.40 min ............................~~(,_,"> 6.53/13.22 min .............................~~(,_,"> 6.77/13.32 min ..............................~~(,_,"> 6.97/13.37 min ...............................~~(,_,"> 7.22/13.48 min ................................~~(,_,"> 7.27/13.25 min ................................~~(,_,"> 7.52/13.38 min .................................~~(,_,"> 7.73/13.43 min ..................................~~(,_,"> 7.95/13.50 min ...................................~~(,_,"> 8.03/13.33 min ....................................~~(,_,"> 8.27/13.43 min ....................................~~(,_,"> 8.42/13.38 min .....................................~~(,_,"> 8.63/13.43 min ......................................~~(,_,"> 8.80/13.42 min .......................................~~(,_,"> 8.95/13.37 min ........................................~~(,_,"> 9.17/13.42 min ........................................~~(,_,"> 9.28/13.33 min .........................................~~(,_,"> 9.48/13.35 min ..........................................~~(,_,"> 9.72/13.43 min ...........................................~~(,_,"> 9.92/13.45 min ............................................~~(,_,"> 10.15/13.53 min .............................................~~(,_,"> 10.25/13.42 min .............................................~~(,_,"> 10.50/13.50 min ..............................................~~(,_,"> 10.67/13.48 min ...............................................~~(,_,"> 10.85/13.48 min ................................................~~(,_,"> 11.05/13.52 min .................................................~~(,_,"> 11.18/13.45 min .................................................~~(,_,"> 11.47/13.57 min ..................................................~~(,_,"> 11.62/13.53 min ...................................................~~(,_,"> 11.85/13.60 min ....................................................~~(,_,"> 11.95/13.50 min .....................................................~~(,_,"> 12.25/13.63 min .....................................................~~(,_,"> 12.28/13.47 min ......................................................~~(,_,"> 12.57/13.58 min .......................................................~~(,_,"> 12.75/13.58 min ........................................................~~(,_,"> 12.98/13.63 min .........................................................~~(,_,"> 13.15/13.62 min .........................................................~~(,_,"> 13.28/13.57 min ..........................................................~~(,_,"> 13.52/13.62 min ...........................................................~~(,_,"> 13.85/13.77 min ............................................................~~(,_,"> 13.85/13.85 min ............................................................~~(,_,"> Maximization ... 000/??? sec ~~(,_,"> [oo] 13/ 13 sec ............................................................~~(,_,"> Estimating accuracies in the orientational assignment ... 000/??? sec ~~(,_,"> [oo] 1/ 30 sec ..~~(,_,"> 2/ 30 sec ...~~(,_,"> 4/ 40 sec ......~~(,_,"> 6/ 45 sec .......~~(,_,"> 7/ 42 sec ..........~~(,_,"> 9/ 45 sec ...........~~(,_,"> 11/ 47 sec ..............~~(,_,"> 12/ 45 sec ...............~~(,_,"> 14/ 46 sec ..................~~(,_,"> 16/ 48 sec ...................~~(,_,"> 17/ 46 sec ......................~~(,_,"> 18/ 45 sec .......................~~(,_,"> 18/ 41 sec ..........................~~(,_,"> 20/ 42 sec ...........................~~(,_,"> 21/ 42 sec ..............................~~(,_,"> 22/ 41 sec ...............................~~(,_,"> 23/ 40 sec ..................................~~(,_,"> 25/ 41 sec ....................................~~(,_,"> 26/ 41 sec ......................................~~(,_,"> 27/ 40 sec .......................................~~(,_,"> 28/ 40 sec ..........................................~~(,_,"> 29/ 39 sec ............................................~~(,_,"> 30/ 39 sec ..............................................~~(,_,"> 31/ 38 sec ................................................~~(,_,"> 32/ 38 sec ..................................................~~(,_,"> 32/ 36 sec ....................................................~~(,_,"> 33/ 36 sec ......................................................~~(,_,"> 34/ 36 sec ........................................................~~(,_,"> 36/ 37 sec ..........................................................~~(,_,"> 37/ 37 sec ............................................................~~(,_,"> Auto-refine: Estimated accuracy angles= 0.46 degrees; offsets= 0.37 pixels CurrentResolution= 14.9655 Angstroms, which requires orientationSampling of at least 4.86486 degrees for a particle of diameter 350 Angstroms Oversampling= 0 NrHiddenVariableSamplingPoints= 2079 OrientationalSampling= 3.75 NrOrientations= 21 TranslationalSampling= 1 NrTranslations= 33 ============================= Oversampling= 1 NrHiddenVariableSamplingPoints= 133056 OrientationalSampling= 1.875 NrOrientations= 168 TranslationalSampling= 0.5 NrTranslations= 264 ============================= Estimated memory for expectation step > 1.19845 Gb, available memory = 24 Gb. Estimated memory for maximization step > 0.125658 Gb, available memory = 24 Gb. Expectation iteration 12 of 15 000/??? sec ~~(,_,"> [oo] 0.23/10.10 min .~~(,_,"> 0.35/9.57 min ..~~(,_,"> 0.63/12.67 min ...~~(,_,"> 0.82/12.87 min ...~~(,_,"> 1.03/13.43 min ....~~(,_,"> 1.12/12.35 min .....~~(,_,"> 1.33/12.83 min ......~~(,_,"> 1.57/13.35 min .......~~(,_,"> 1.78/13.63 min .......~~(,_,"> 2.00/13.87 min ........~~(,_,"> 2.17/13.73 min .........~~(,_,"> 2.40/14.02 min ..........~~(,_,"> 2.57/13.90 min ...........~~(,_,"> 2.75/13.88 min ...........~~(,_,"> 2.95/13.93 min ............~~(,_,"> 3.13/13.92 min .............~~(,_,"> 3.37/14.12 min ..............~~(,_,"> 3.48/13.82 min ...............~~(,_,"> 3.72/14.00 min ...............~~(,_,"> 3.95/14.15 min ................~~(,_,"> 4.10/14.02 min .................~~(,_,"> 4.32/14.12 min ..................~~(,_,"> 4.45/13.93 min ...................~~(,_,"> 4.65/13.97 min ...................~~(,_,"> 4.93/14.25 min ....................~~(,_,"> 5.08/14.13 min .....................~~(,_,"> 5.27/14.12 min ......................~~(,_,"> 5.45/14.08 min .......................~~(,_,"> 5.68/14.20 min .......................~~(,_,"> 5.90/14.27 min ........................~~(,_,"> 6.02/14.08 min .........................~~(,_,"> 6.23/14.15 min ..........................~~(,_,"> 6.40/14.10 min ...........................~~(,_,"> 6.60/14.12 min ............................~~(,_,"> 6.87/14.27 min ............................~~(,_,"> 6.98/14.12 min .............................~~(,_,"> 7.18/14.13 min ..............................~~(,_,"> 7.40/14.18 min ...............................~~(,_,"> 7.60/14.20 min ................................~~(,_,"> 7.75/14.13 min ................................~~(,_,"> 7.97/14.18 min .................................~~(,_,"> 8.15/14.17 min ..................................~~(,_,"> 8.35/14.18 min ...................................~~(,_,"> 8.50/14.12 min ....................................~~(,_,"> 8.73/14.18 min ....................................~~(,_,"> 8.98/14.28 min .....................................~~(,_,"> 9.13/14.22 min ......................................~~(,_,"> 9.38/14.30 min .......................................~~(,_,"> 9.52/14.22 min ........................................~~(,_,"> 9.75/14.27 min ........................................~~(,_,"> 9.90/14.22 min .........................................~~(,_,"> 10.15/14.30 min ..........................................~~(,_,"> 10.28/14.22 min ...........................................~~(,_,"> 10.48/14.22 min ............................................~~(,_,"> 10.68/14.23 min .............................................~~(,_,"> 10.92/14.28 min .............................................~~(,_,"> 11.03/14.20 min ..............................................~~(,_,"> 11.30/14.28 min ...............................................~~(,_,"> 11.52/14.32 min ................................................~~(,_,"> 11.70/14.30 min .................................................~~(,_,"> 11.83/14.23 min .................................................~~(,_,"> 12.03/14.25 min ..................................................~~(,_,"> 12.30/14.33 min ...................................................~~(,_,"> 12.45/14.28 min ....................................................~~(,_,"> 12.70/14.35 min .....................................................~~(,_,"> 12.78/14.23 min .....................................................~~(,_,"> 13.07/14.33 min ......................................................~~(,_,"> 13.27/14.33 min .......................................................~~(,_,"> 13.47/14.33 min ........................................................~~(,_,"> 13.65/14.33 min .........................................................~~(,_,"> 13.83/14.32 min .........................................................~~(,_,"> 14.02/14.32 min ..........................................................~~(,_,"> 14.28/14.38 min ...........................................................~~(,_,"> 14.58/14.50 min ............................................................~~(,_,"> 14.58/14.58 min ............................................................~~(,_,"> Maximization ... 000/??? sec ~~(,_,"> [oo] 11/ 11 sec ............................................................~~(,_,"> Estimating accuracies in the orientational assignment ... 000/??? sec ~~(,_,"> [oo] 1/ 30 sec ..~~(,_,"> 3/ 45 sec ...~~(,_,"> 4/ 40 sec ......~~(,_,"> 6/ 45 sec .......~~(,_,"> 7/ 42 sec ..........~~(,_,"> 8/ 40 sec ...........~~(,_,"> 10/ 42 sec ..............~~(,_,"> 12/ 45 sec ...............~~(,_,"> 14/ 46 sec ..................~~(,_,"> 15/ 45 sec ...................~~(,_,"> 16/ 43 sec ......................~~(,_,"> 18/ 45 sec .......................~~(,_,"> 18/ 41 sec ..........................~~(,_,"> 20/ 42 sec ...........................~~(,_,"> 21/ 42 sec ..............................~~(,_,"> 21/ 39 sec ...............................~~(,_,"> 22/ 38 sec ..................................~~(,_,"> 23/ 38 sec ....................................~~(,_,"> 25/ 39 sec ......................................~~(,_,"> 26/ 39 sec .......................................~~(,_,"> 27/ 38 sec ..........................................~~(,_,"> 28/ 38 sec ............................................~~(,_,"> 29/ 37 sec ..............................................~~(,_,"> 30/ 37 sec ................................................~~(,_,"> 31/ 37 sec ..................................................~~(,_,"> 32/ 36 sec ....................................................~~(,_,"> 33/ 36 sec ......................................................~~(,_,"> 35/ 37 sec ........................................................~~(,_,"> 36/ 37 sec ..........................................................~~(,_,"> 37/ 37 sec ............................................................~~(,_,"> Auto-refine: Estimated accuracy angles= 0.44 degrees; offsets= 0.36 pixels CurrentResolution= 14.4667 Angstroms, which requires orientationSampling of at least 4.67532 degrees for a particle of diameter 350 Angstroms Oversampling= 0 NrHiddenVariableSamplingPoints= 2079 OrientationalSampling= 3.75 NrOrientations= 21 TranslationalSampling= 1 NrTranslations= 33 ============================= Oversampling= 1 NrHiddenVariableSamplingPoints= 133056 OrientationalSampling= 1.875 NrOrientations= 168 TranslationalSampling= 0.5 NrTranslations= 264 ============================= Estimated memory for expectation step > 1.3794 Gb, available memory = 24 Gb. Estimated memory for maximization step > 0.14609 Gb, available memory = 24 Gb. Expectation iteration 13 of 15 000/??? sec ~~(,_,"> [oo] 0.25/10.83 min .~~(,_,"> 0.40/10.93 min ..~~(,_,"> 0.63/12.67 min ...~~(,_,"> 0.83/13.12 min ...~~(,_,"> 1.12/14.52 min ....~~(,_,"> 1.20/13.27 min .....~~(,_,"> 1.55/14.92 min ......~~(,_,"> 1.80/15.33 min .......~~(,_,"> 1.93/14.78 min .......~~(,_,"> 2.20/15.25 min ........~~(,_,"> 2.47/15.63 min .........~~(,_,"> 2.77/16.15 min ..........~~(,_,"> 2.97/16.07 min ...........~~(,_,"> 3.27/16.48 min ...........~~(,_,"> 3.37/15.90 min ............~~(,_,"> 3.62/16.07 min .............~~(,_,"> 3.95/16.55 min ..............~~(,_,"> 4.07/16.13 min ...............~~(,_,"> 4.38/16.52 min ...............~~(,_,"> 4.55/16.32 min ................~~(,_,"> 4.80/16.42 min .................~~(,_,"> 5.10/16.67 min ..................~~(,_,"> 5.22/16.33 min ...................~~(,_,"> 5.48/16.47 min ...................~~(,_,"> 5.75/16.60 min ....................~~(,_,"> 6.02/16.72 min .....................~~(,_,"> 6.23/16.70 min ......................~~(,_,"> 6.42/16.60 min .......................~~(,_,"> 6.62/16.53 min .......................~~(,_,"> 6.90/16.68 min ........................~~(,_,"> 7.17/16.78 min .........................~~(,_,"> 7.32/16.60 min ..........................~~(,_,"> 7.50/16.52 min ...........................~~(,_,"> 7.85/16.78 min ............................~~(,_,"> 7.95/16.53 min ............................~~(,_,"> 8.25/16.68 min .............................~~(,_,"> 8.42/16.57 min ..............................~~(,_,"> 8.68/16.65 min ...............................~~(,_,"> 8.83/16.52 min ................................~~(,_,"> 9.12/16.63 min ................................~~(,_,"> 9.38/16.70 min .................................~~(,_,"> 9.50/16.52 min ..................................~~(,_,"> 9.85/16.73 min ...................................~~(,_,"> 10.05/16.68 min ....................................~~(,_,"> 10.23/16.62 min ....................................~~(,_,"> 10.50/16.68 min .....................................~~(,_,"> 10.67/16.60 min ......................................~~(,_,"> 10.97/16.72 min .......................................~~(,_,"> 11.13/16.63 min ........................................~~(,_,"> 11.40/16.68 min ........................................~~(,_,"> 11.67/16.75 min .........................................~~(,_,"> 11.80/16.62 min ..........................................~~(,_,"> 12.00/16.58 min ...........................................~~(,_,"> 12.28/16.67 min ............................................~~(,_,"> 12.52/16.68 min .............................................~~(,_,"> 12.73/16.67 min .............................................~~(,_,"> 12.95/16.67 min ..............................................~~(,_,"> 13.18/16.67 min ...............................................~~(,_,"> 13.45/16.72 min ................................................~~(,_,"> 13.55/16.57 min .................................................~~(,_,"> 13.82/16.62 min .................................................~~(,_,"> 14.07/16.65 min ..................................................~~(,_,"> 14.30/16.67 min ...................................................~~(,_,"> 14.63/16.78 min ....................................................~~(,_,"> 14.75/16.67 min .....................................................~~(,_,"> 15.03/16.73 min .....................................................~~(,_,"> 15.25/16.72 min ......................................................~~(,_,"> 15.53/16.78 min .......................................................~~(,_,"> 15.68/16.70 min ........................................................~~(,_,"> 15.95/16.75 min .........................................................~~(,_,"> 16.20/16.77 min .........................................................~~(,_,"> 16.33/16.68 min ..........................................................~~(,_,"> 16.70/16.82 min ...........................................................~~(,_,"> 17.03/16.93 min ............................................................~~(,_,"> 17.03/17.03 min ............................................................~~(,_,"> Maximization ... 000/??? sec ~~(,_,"> [oo] 15/ 15 sec ............................................................~~(,_,"> Estimating accuracies in the orientational assignment ... 000/??? sec ~~(,_,"> [oo] 2/ 60 sec ..~~(,_,"> 4/ 60 sec ...~~(,_,"> 5/ 50 sec ......~~(,_,"> 6/ 45 sec .......~~(,_,"> 8/ 48 sec ..........~~(,_,"> 9/ 45 sec ...........~~(,_,"> 10/ 42 sec ..............~~(,_,"> 12/ 45 sec ...............~~(,_,"> 14/ 46 sec ..................~~(,_,"> 16/ 48 sec ...................~~(,_,"> 16/ 43 sec ......................~~(,_,"> 18/ 45 sec .......................~~(,_,"> 19/ 43 sec ..........................~~(,_,"> 21/ 45 sec ...........................~~(,_,"> 22/ 44 sec ..............................~~(,_,"> 24/ 45 sec ...............................~~(,_,"> 25/ 44 sec ..................................~~(,_,"> 26/ 43 sec ....................................~~(,_,"> 28/ 44 sec ......................................~~(,_,"> 29/ 43 sec .......................................~~(,_,"> 30/ 42 sec ..........................................~~(,_,"> 31/ 42 sec ............................................~~(,_,"> 32/ 41 sec ..............................................~~(,_,"> 33/ 41 sec ................................................~~(,_,"> 34/ 40 sec ..................................................~~(,_,"> 35/ 40 sec ....................................................~~(,_,"> 36/ 40 sec ......................................................~~(,_,"> 38/ 40 sec ........................................................~~(,_,"> 39/ 40 sec ..........................................................~~(,_,"> 40/ 40 sec ............................................................~~(,_,"> Auto-refine: Estimated accuracy angles= 0.42 degrees; offsets= 0.36 pixels CurrentResolution= 14 Angstroms, which requires orientationSampling of at least 4.55696 degrees for a particle of diameter 350 Angstroms Oversampling= 0 NrHiddenVariableSamplingPoints= 2079 OrientationalSampling= 3.75 NrOrientations= 21 TranslationalSampling= 1 NrTranslations= 33 ============================= Oversampling= 1 NrHiddenVariableSamplingPoints= 133056 OrientationalSampling= 1.875 NrOrientations= 168 TranslationalSampling= 0.5 NrTranslations= 264 ============================= Estimated memory for expectation step > 1.47693 Gb, available memory = 24 Gb. Estimated memory for maximization step > 0.157089 Gb, available memory = 24 Gb. Expectation iteration 14 of 15 000/??? sec ~~(,_,"> [oo] 0.32/13.72 min .~~(,_,"> 0.45/12.30 min ..~~(,_,"> 0.85/17.00 min ...~~(,_,"> 0.98/15.48 min ...~~(,_,"> 1.30/16.90 min ....~~(,_,"> 1.57/17.33 min .....~~(,_,"> 1.80/17.33 min ......~~(,_,"> 1.97/16.75 min .......~~(,_,"> 2.23/17.07 min .......~~(,_,"> 2.58/17.90 min ........~~(,_,"> 2.73/17.33 min .........~~(,_,"> 2.95/17.23 min ..........~~(,_,"> 3.22/17.42 min ...........~~(,_,"> 3.53/17.83 min ...........~~(,_,"> 3.77/17.80 min ............~~(,_,"> 4.00/17.77 min .............~~(,_,"> 4.18/17.53 min ..............~~(,_,"> 4.42/17.52 min ...............~~(,_,"> 4.67/17.58 min ...............~~(,_,"> 4.87/17.45 min ................~~(,_,"> 5.15/17.62 min .................~~(,_,"> 5.35/17.48 min ..................~~(,_,"> 5.62/17.58 min ...................~~(,_,"> 5.88/17.68 min ...................~~(,_,"> 6.08/17.57 min ....................~~(,_,"> 6.30/17.52 min .....................~~(,_,"> 6.53/17.50 min ......................~~(,_,"> 6.87/17.75 min .......................~~(,_,"> 7.05/17.62 min .......................~~(,_,"> 7.33/17.73 min ........................~~(,_,"> 7.63/17.87 min .........................~~(,_,"> 7.77/17.63 min ..........................~~(,_,"> 8.07/17.77 min ...........................~~(,_,"> 8.27/17.68 min ............................~~(,_,"> 8.50/17.67 min ............................~~(,_,"> 8.68/17.57 min .............................~~(,_,"> 8.97/17.65 min ..............................~~(,_,"> 9.18/17.62 min ...............................~~(,_,"> 9.45/17.67 min ................................~~(,_,"> 9.68/17.67 min ................................~~(,_,"> 9.97/17.73 min .................................~~(,_,"> 10.18/17.70 min ..................................~~(,_,"> 10.47/17.78 min ...................................~~(,_,"> 10.72/17.80 min ....................................~~(,_,"> 10.98/17.83 min ....................................~~(,_,"> 11.23/17.85 min .....................................~~(,_,"> 11.52/17.92 min ......................................~~(,_,"> 11.68/17.80 min .......................................~~(,_,"> 11.90/17.77 min ........................................~~(,_,"> 12.15/17.78 min ........................................~~(,_,"> 12.42/17.83 min .........................................~~(,_,"> 12.60/17.75 min ..........................................~~(,_,"> 12.90/17.83 min ...........................................~~(,_,"> 13.13/17.82 min ............................................~~(,_,"> 13.42/17.88 min .............................................~~(,_,"> 13.73/17.98 min .............................................~~(,_,"> 13.82/17.78 min ..............................................~~(,_,"> 14.15/17.90 min ...............................................~~(,_,"> 14.38/17.88 min ................................................~~(,_,"> 14.65/17.92 min .................................................~~(,_,"> 14.82/17.83 min .................................................~~(,_,"> 15.07/17.83 min ..................................................~~(,_,"> 15.38/17.93 min ...................................................~~(,_,"> 15.67/17.98 min ....................................................~~(,_,"> 15.78/17.83 min .....................................................~~(,_,"> 16.13/17.95 min .....................................................~~(,_,"> 16.32/17.90 min ......................................................~~(,_,"> 16.53/17.87 min .......................................................~~(,_,"> 16.83/17.93 min ........................................................~~(,_,"> 17.07/17.92 min .........................................................~~(,_,"> 17.28/17.90 min .........................................................~~(,_,"> 17.50/17.87 min ..........................................................~~(,_,"> 17.73/17.87 min ...........................................................~~(,_,"> 18.17/18.07 min ............................................................~~(,_,"> 18.17/18.17 min ............................................................~~(,_,"> Maximization ... 000/??? sec ~~(,_,"> [oo] 18/ 18 sec ............................................................~~(,_,"> Estimating accuracies in the orientational assignment ... 000/??? sec ~~(,_,"> [oo] 2/ 60 sec ..~~(,_,"> 4/ 60 sec ...~~(,_,"> 5/ 50 sec ......~~(,_,"> 7/ 52 sec .......~~(,_,"> 8/ 48 sec ..........~~(,_,"> 9/ 45 sec ...........~~(,_,"> 11/ 47 sec ..............~~(,_,"> 12/ 45 sec ...............~~(,_,"> 14/ 46 sec ..................~~(,_,"> 15/ 45 sec ...................~~(,_,"> 16/ 43 sec ......................~~(,_,"> 18/ 45 sec .......................~~(,_,"> 19/ 43 sec ..........................~~(,_,"> 20/ 42 sec ...........................~~(,_,"> 21/ 42 sec ..............................~~(,_,"> 22/ 41 sec ...............................~~(,_,"> 23/ 40 sec ..................................~~(,_,"> 25/ 41 sec ....................................~~(,_,"> 26/ 41 sec ......................................~~(,_,"> 28/ 42 sec .......................................~~(,_,"> 28/ 40 sec ..........................................~~(,_,"> 30/ 40 sec ............................................~~(,_,"> 31/ 40 sec ..............................................~~(,_,"> 33/ 41 sec ................................................~~(,_,"> 33/ 39 sec ..................................................~~(,_,"> 35/ 40 sec ....................................................~~(,_,"> 36/ 40 sec ......................................................~~(,_,"> 38/ 40 sec ........................................................~~(,_,"> 39/ 40 sec ..........................................................~~(,_,"> 40/ 40 sec ............................................................~~(,_,"> Auto-refine: Estimated accuracy angles= 0.42 degrees; offsets= 0.36 pixels CurrentResolution= 13.5625 Angstroms, which requires orientationSampling of at least 4.39024 degrees for a particle of diameter 350 Angstroms Oversampling= 0 NrHiddenVariableSamplingPoints= 2079 OrientationalSampling= 3.75 NrOrientations= 21 TranslationalSampling= 1 NrTranslations= 33 ============================= Oversampling= 1 NrHiddenVariableSamplingPoints= 133056 OrientationalSampling= 1.875 NrOrientations= 168 TranslationalSampling= 0.5 NrTranslations= 264 ============================= Estimated memory for expectation step > 1.57931 Gb, available memory = 24 Gb. Estimated memory for maximization step > 0.168626 Gb, available memory = 24 Gb. Expectation iteration 15 of 15 000/??? sec ~~(,_,"> [oo] 0.35/15.17 min .~~(,_,"> 0.45/12.30 min ..~~(,_,"> 0.83/16.67 min ...~~(,_,"> 0.93/14.70 min ...~~(,_,"> 1.28/16.68 min ....~~(,_,"> 1.50/16.58 min .....~~(,_,"> 1.85/17.80 min ......~~(,_,"> 2.02/17.18 min .......~~(,_,"> 2.30/17.58 min .......~~(,_,"> 2.65/18.37 min ........~~(,_,"> 2.85/18.07 min .........~~(,_,"> 3.23/18.88 min ..........~~(,_,"> 3.32/17.95 min ...........~~(,_,"> 3.70/18.67 min ...........~~(,_,"> 4.02/18.98 min ............~~(,_,"> 4.23/18.80 min .............~~(,_,"> 4.47/18.72 min ..............~~(,_,"> 4.75/18.85 min ...............~~(,_,"> 4.98/18.77 min ...............~~(,_,"> 5.30/19.00 min ................~~(,_,"> 5.55/18.98 min .................~~(,_,"> 5.75/18.80 min ..................~~(,_,"> 6.00/18.78 min ...................~~(,_,"> 6.25/18.78 min ...................~~(,_,"> 6.48/18.72 min ....................~~(,_,"> 6.78/18.85 min .....................~~(,_,"> 7.13/19.12 min ......................~~(,_,"> 7.22/18.67 min .......................~~(,_,"> 7.58/18.95 min .......................~~(,_,"> 7.88/19.07 min ........................~~(,_,"> 8.13/19.05 min .........................~~(,_,"> 8.38/19.03 min ..........................~~(,_,"> 8.47/18.65 min ...........................~~(,_,"> 8.83/18.90 min ............................~~(,_,"> 9.07/18.85 min ............................~~(,_,"> 9.45/19.12 min .............................~~(,_,"> 9.55/18.80 min ..............................~~(,_,"> 9.90/18.98 min ...............................~~(,_,"> 10.23/19.13 min ................................~~(,_,"> 10.43/19.03 min ................................~~(,_,"> 10.65/18.95 min .................................~~(,_,"> 10.83/18.83 min ..................................~~(,_,"> 11.17/18.97 min ...................................~~(,_,"> 11.42/18.97 min ....................................~~(,_,"> 11.70/19.00 min ....................................~~(,_,"> 11.97/19.02 min .....................................~~(,_,"> 12.18/18.97 min ......................................~~(,_,"> 12.48/19.03 min .......................................~~(,_,"> 12.75/19.05 min ........................................~~(,_,"> 13.00/19.03 min ........................................~~(,_,"> 13.25/19.02 min .........................................~~(,_,"> 13.47/18.97 min ..........................................~~(,_,"> 13.77/19.03 min ...........................................~~(,_,"> 14.10/19.13 min ............................................~~(,_,"> 14.42/19.22 min .............................................~~(,_,"> 14.57/19.07 min .............................................~~(,_,"> 14.93/19.22 min ..............................................~~(,_,"> 15.05/19.03 min ...............................................~~(,_,"> 15.35/19.08 min ................................................~~(,_,"> 15.65/19.13 min .................................................~~(,_,"> 15.97/19.22 min .................................................~~(,_,"> 16.13/19.10 min ..................................................~~(,_,"> 16.42/19.13 min ...................................................~~(,_,"> 16.60/19.05 min ....................................................~~(,_,"> 16.93/19.13 min .....................................................~~(,_,"> 17.20/19.15 min .....................................................~~(,_,"> 17.52/19.20 min ......................................................~~(,_,"> 17.87/19.30 min .......................................................~~(,_,"> 17.98/19.15 min ........................................................~~(,_,"> 18.30/19.22 min .........................................................~~(,_,"> 18.55/19.20 min .........................................................~~(,_,"> 18.88/19.28 min ..........................................................~~(,_,"> 19.00/19.13 min ...........................................................~~(,_,"> 19.48/19.38 min ............................................................~~(,_,"> 19.48/19.48 min ............................................................~~(,_,"> Maximization ... 000/??? sec ~~(,_,"> [oo] 11/ 11 sec ............................................................~~(,_,">