Warning: no access to tty (Bad file descriptor). Thus no job control in this shell. lmbwide.login complete +------------------------------------------------ LMB crystallography software CCP4 release 6.5 installed 12/01/2015 updated Feb 201 Phil Evans If you really want to use the older (6.4.0) version, edit your .login to "source /public/xtal/ccp4/xtal-6.4.0.login" and login again ------------------------------------------------------------------------------ phenix release 1.10 installed 9.9.15 Phil Evans Type "phenix &" to get GUI ------------------------------------------------------------------------------ sharp server is on hal:8082, Sharp version 2.8.2 Phil Evans/Roger Williams ------------------------------------------------------------------------------ coot now points to the very latest. Stable coot is available with old-coot ------------------------------------------------------------------------------ imosflm (1.0.7) and ipmosflm (7.0.9) May 2012 ------------------------------------------------------------------------------ qtmg or ccp4mg run the CCP4 molecular graphics program ------------------------------------------------------------------------------ MAIN 2014 Jan Löwe 10/14 ------------------------------------------------------------------------------ ************************************************** MRC image processing programs have moved. You are using image2010 by default. If you wish to use the frozen image2000 you need to : source /public/EM/image2000/com/image.login and source /public/EM/image2000/com/image.cshrc Jude Short (F46 x2039 jms@mrc-lmb.cam.ac.uk) 09.03.2011 ************************************************** === RELION MPI setup === + Number of MPI processes = 12 + Number of threads per MPI process = 6 + Total number of threads therefore = 72 + Master (0) runs on host = fmb209.lmb.internal + Slave 3 runs on host = fmb209.lmb.internal + Slave 1 runs on host = fmb237.lmb.internal + Slave 6 runs on host = fmb209.lmb.internal + Slave 4 runs on host = fmb237.lmb.internal + Slave 9 runs on host = fmb209.lmb.internal ================= + Slave 2 runs on host = fmb230.lmb.internal + Slave 5 runs on host = fmb230.lmb.internal + Slave 7 runs on host = fmb237.lmb.internal + Slave 8 runs on host = fmb230.lmb.internal + Slave 10 runs on host = fmb237.lmb.internal + Slave 11 runs on host = fmb230.lmb.internal Running in double precision. Estimating accuracies in the orientational assignment ... 000/??? sec ~~(,_,"> [oo] 1/ 30 sec ..~~(,_,"> 2/ 30 sec ...~~(,_,"> 3/ 30 sec ......~~(,_,"> 4/ 30 sec .......~~(,_,"> 5/ 30 sec ..........~~(,_,"> 6/ 30 sec ...........~~(,_,"> 7/ 30 sec ..............~~(,_,"> 8/ 30 sec ...............~~(,_,"> 10/ 33 sec ..................~~(,_,"> 11/ 33 sec ...................~~(,_,"> 11/ 30 sec ......................~~(,_,"> 12/ 30 sec .......................~~(,_,"> 13/ 30 sec ..........................~~(,_,"> 14/ 30 sec ...........................~~(,_,"> 15/ 30 sec ..............................~~(,_,"> 15/ 28 sec ...............................~~(,_,"> 16/ 28 sec ..................................~~(,_,"> 17/ 28 sec ....................................~~(,_,"> 18/ 28 sec ......................................~~(,_,"> 19/ 28 sec .......................................~~(,_,"> 19/ 27 sec ..........................................~~(,_,"> 20/ 27 sec ............................................~~(,_,"> 21/ 27 sec ..............................................~~(,_,"> 22/ 27 sec ................................................~~(,_,"> 23/ 27 sec ..................................................~~(,_,"> 23/ 26 sec ....................................................~~(,_,"> 24/ 26 sec ......................................................~~(,_,"> 25/ 26 sec ........................................................~~(,_,"> 26/ 26 sec ..........................................................~~(,_,"> 26/ 26 sec ............................................................~~(,_,"> Auto-refine: Estimated accuracy angles= 0.41 degrees; offsets= 0.34 pixels CurrentResolution= 13.5625 Angstroms, which requires orientationSampling of at least 4.39024 degrees for a particle of diameter 350 Angstroms Oversampling= 0 NrHiddenVariableSamplingPoints= 2673 OrientationalSampling= 1.875 NrOrientations= 27 TranslationalSampling= 1 NrTranslations= 33 ============================= Oversampling= 1 NrHiddenVariableSamplingPoints= 171072 OrientationalSampling= 0.9375 NrOrientations= 216 TranslationalSampling= 0.5 NrTranslations= 264 ============================= Estimated memory for expectation step > 1.58101 Gb, available memory = 24 Gb. Estimated memory for maximization step > 0.168626 Gb, available memory = 24 Gb. Expectation iteration 16 of 20 000/??? sec ~~(,_,"> [oo] 0.45/19.50 min .~~(,_,"> 0.70/19.15 min ..~~(,_,"> 1.15/23.00 min ...~~(,_,"> 1.43/22.58 min ...~~(,_,"> 1.90/24.70 min ....~~(,_,"> 2.22/24.52 min .....~~(,_,"> 2.73/26.32 min ......~~(,_,"> 2.97/25.28 min .......~~(,_,"> 3.40/26.00 min .......~~(,_,"> 3.87/26.80 min ........~~(,_,"> 4.13/26.20 min .........~~(,_,"> 4.65/27.17 min ..........~~(,_,"> 4.93/26.72 min ...........~~(,_,"> 5.43/27.42 min ...........~~(,_,"> 5.78/27.33 min ............~~(,_,"> 6.12/27.18 min .............~~(,_,"> 6.48/27.18 min ..............~~(,_,"> 7.05/27.98 min ...............~~(,_,"> 7.40/27.88 min ...............~~(,_,"> 7.70/27.60 min ................~~(,_,"> 8.10/27.70 min .................~~(,_,"> 8.55/27.95 min ..................~~(,_,"> 8.97/28.08 min ...................~~(,_,"> 9.20/27.65 min ...................~~(,_,"> 9.68/27.97 min ....................~~(,_,"> 10.03/27.90 min .....................~~(,_,"> 10.45/28.00 min ......................~~(,_,"> 10.80/27.93 min .......................~~(,_,"> 11.22/28.03 min .......................~~(,_,"> 11.75/28.42 min ........................~~(,_,"> 11.93/27.95 min .........................~~(,_,"> 12.47/28.30 min ..........................~~(,_,"> 12.83/28.27 min ...........................~~(,_,"> 13.17/28.17 min ............................~~(,_,"> 13.60/28.28 min ............................~~(,_,"> 13.95/28.22 min .............................~~(,_,"> 14.35/28.25 min ..............................~~(,_,"> 14.78/28.35 min ...............................~~(,_,"> 15.22/28.45 min ................................~~(,_,"> 15.50/28.27 min ................................~~(,_,"> 15.93/28.37 min .................................~~(,_,"> 16.23/28.22 min ..................................~~(,_,"> 16.70/28.37 min ...................................~~(,_,"> 16.97/28.18 min ....................................~~(,_,"> 17.42/28.30 min ....................................~~(,_,"> 17.88/28.43 min .....................................~~(,_,"> 18.12/28.20 min ......................................~~(,_,"> 18.57/28.30 min .......................................~~(,_,"> 18.92/28.25 min ........................................~~(,_,"> 19.38/28.38 min ........................................~~(,_,"> 19.65/28.22 min .........................................~~(,_,"> 20.07/28.27 min ..........................................~~(,_,"> 20.40/28.20 min ...........................................~~(,_,"> 20.82/28.25 min ............................................~~(,_,"> 21.22/28.28 min .............................................~~(,_,"> 21.65/28.35 min .............................................~~(,_,"> 22.05/28.37 min ..............................................~~(,_,"> 22.42/28.35 min ...............................................~~(,_,"> 22.78/28.33 min ................................................~~(,_,"> 23.17/28.33 min .................................................~~(,_,"> 23.57/28.37 min .................................................~~(,_,"> 23.93/28.33 min ..................................................~~(,_,"> 24.38/28.42 min ...................................................~~(,_,"> 24.72/28.37 min ....................................................~~(,_,"> 25.13/28.40 min .....................................................~~(,_,"> 25.50/28.38 min .....................................................~~(,_,"> 25.83/28.33 min ......................................................~~(,_,"> 26.32/28.45 min .......................................................~~(,_,"> 26.67/28.40 min ........................................................~~(,_,"> 27.08/28.45 min .........................................................~~(,_,"> 27.38/28.35 min .........................................................~~(,_,"> 27.77/28.37 min ..........................................................~~(,_,"> 28.22/28.43 min ...........................................................~~(,_,"> 28.88/28.73 min ............................................................~~(,_,"> 28.88/28.88 min ............................................................~~(,_,"> Maximization ... 000/??? sec ~~(,_,"> [oo] 10/ 10 sec ............................................................~~(,_,"> Estimating accuracies in the orientational assignment ... 000/??? sec ~~(,_,"> [oo] 1/ 30 sec ..~~(,_,"> 2/ 30 sec ...~~(,_,"> 4/ 40 sec ......~~(,_,"> 5/ 37 sec .......~~(,_,"> 6/ 36 sec ..........~~(,_,"> 8/ 40 sec ...........~~(,_,"> 9/ 38 sec ..............~~(,_,"> 10/ 37 sec ...............~~(,_,"> 12/ 40 sec ..................~~(,_,"> 13/ 39 sec ...................~~(,_,"> 14/ 38 sec ......................~~(,_,"> 15/ 37 sec .......................~~(,_,"> 16/ 36 sec ..........................~~(,_,"> 16/ 34 sec ...........................~~(,_,"> 17/ 34 sec ..............................~~(,_,"> 18/ 33 sec ...............................~~(,_,"> 19/ 33 sec ..................................~~(,_,"> 20/ 33 sec ....................................~~(,_,"> 21/ 33 sec ......................................~~(,_,"> 22/ 33 sec .......................................~~(,_,"> 23/ 32 sec ..........................................~~(,_,"> 24/ 32 sec ............................................~~(,_,"> 25/ 32 sec ..............................................~~(,_,"> 26/ 32 sec ................................................~~(,_,"> 27/ 32 sec ..................................................~~(,_,"> 28/ 32 sec ....................................................~~(,_,"> 29/ 32 sec ......................................................~~(,_,"> 30/ 32 sec ........................................................~~(,_,"> 31/ 32 sec ..........................................................~~(,_,"> 32/ 32 sec ............................................................~~(,_,"> Auto-refine: Estimated accuracy angles= 0.38 degrees; offsets= 0.32 pixels CurrentResolution= 12.7647 Angstroms, which requires orientationSampling of at least 4.13793 degrees for a particle of diameter 350 Angstroms Oversampling= 0 NrHiddenVariableSamplingPoints= 2673 OrientationalSampling= 1.875 NrOrientations= 27 TranslationalSampling= 1 NrTranslations= 33 ============================= Oversampling= 1 NrHiddenVariableSamplingPoints= 171072 OrientationalSampling= 0.9375 NrOrientations= 216 TranslationalSampling= 0.5 NrTranslations= 264 ============================= Estimated memory for expectation step > 1.80081 Gb, available memory = 24 Gb. Estimated memory for maximization step > 0.193366 Gb, available memory = 24 Gb. Expectation iteration 17 of 20 000/??? sec ~~(,_,"> [oo] 0.62/26.72 min .~~(,_,"> 0.75/20.52 min ..~~(,_,"> 1.35/27.00 min ...~~(,_,"> 1.78/28.10 min ...~~(,_,"> 2.12/27.52 min ....~~(,_,"> 2.67/29.50 min .....~~(,_,"> 3.12/30.00 min ......~~(,_,"> 3.50/29.83 min .......~~(,_,"> 3.88/29.68 min .......~~(,_,"> 4.23/29.35 min ........~~(,_,"> 4.70/29.80 min .........~~(,_,"> 5.27/30.77 min ..........~~(,_,"> 5.57/30.15 min ...........~~(,_,"> 6.02/30.37 min ...........~~(,_,"> 6.62/31.27 min ............~~(,_,"> 6.92/30.73 min .............~~(,_,"> 7.45/31.23 min ..............~~(,_,"> 7.98/31.68 min ...............~~(,_,"> 8.37/31.52 min ...............~~(,_,"> 8.75/31.37 min ................~~(,_,"> 9.25/31.63 min .................~~(,_,"> 9.62/31.45 min ..................~~(,_,"> 10.05/31.47 min ...................~~(,_,"> 10.43/31.35 min ...................~~(,_,"> 10.87/31.38 min ....................~~(,_,"> 11.47/31.88 min .....................~~(,_,"> 11.80/31.62 min ......................~~(,_,"> 12.27/31.73 min .......................~~(,_,"> 12.75/31.87 min .......................~~(,_,"> 13.28/32.12 min ........................~~(,_,"> 13.55/31.73 min .........................~~(,_,"> 14.07/31.93 min ..........................~~(,_,"> 14.48/31.90 min ...........................~~(,_,"> 14.97/32.02 min ............................~~(,_,"> 15.52/32.27 min ............................~~(,_,"> 15.75/31.87 min .............................~~(,_,"> 16.45/32.40 min ..............................~~(,_,"> 16.67/31.97 min ...............................~~(,_,"> 17.20/32.17 min ................................~~(,_,"> 17.80/32.47 min ................................~~(,_,"> 17.93/31.93 min .................................~~(,_,"> 18.57/32.28 min ..................................~~(,_,"> 18.85/32.02 min ...................................~~(,_,"> 19.35/32.13 min ....................................~~(,_,"> 19.82/32.20 min ....................................~~(,_,"> 20.20/32.12 min .....................................~~(,_,"> 20.68/32.20 min ......................................~~(,_,"> 21.18/32.30 min .......................................~~(,_,"> 21.50/32.12 min ........................................~~(,_,"> 21.95/32.15 min ........................................~~(,_,"> 22.52/32.33 min .........................................~~(,_,"> 22.75/32.05 min ..........................................~~(,_,"> 23.35/32.28 min ...........................................~~(,_,"> 23.72/32.20 min ............................................~~(,_,"> 24.18/32.23 min .............................................~~(,_,"> 24.80/32.48 min .............................................~~(,_,"> 25.10/32.30 min ..............................................~~(,_,"> 25.60/32.38 min ...............................................~~(,_,"> 26.00/32.33 min ................................................~~(,_,"> 26.63/32.58 min .................................................~~(,_,"> 26.75/32.18 min .................................................~~(,_,"> 27.38/32.43 min ..................................................~~(,_,"> 27.75/32.35 min ...................................................~~(,_,"> 28.22/32.38 min ....................................................~~(,_,"> 28.60/32.32 min .....................................................~~(,_,"> 29.05/32.33 min .....................................................~~(,_,"> 29.58/32.45 min ......................................................~~(,_,"> 30.02/32.45 min .......................................................~~(,_,"> 30.43/32.42 min ........................................................~~(,_,"> 30.75/32.30 min .........................................................~~(,_,"> 31.27/32.38 min .........................................................~~(,_,"> 31.63/32.32 min ..........................................................~~(,_,"> 32.25/32.50 min ...........................................................~~(,_,"> 32.95/32.77 min ............................................................~~(,_,"> 32.95/32.95 min ............................................................~~(,_,"> Maximization ... 000/??? sec ~~(,_,"> [oo] 21/ 21 sec ............................................................~~(,_,"> Estimating accuracies in the orientational assignment ... 000/??? sec ~~(,_,"> [oo] 1/ 30 sec ..~~(,_,"> 3/ 45 sec ...~~(,_,"> 4/ 40 sec ......~~(,_,"> 5/ 37 sec .......~~(,_,"> 7/ 42 sec ..........~~(,_,"> 8/ 40 sec ...........~~(,_,"> 9/ 38 sec ..............~~(,_,"> 11/ 41 sec ...............~~(,_,"> 12/ 40 sec ..................~~(,_,"> 13/ 39 sec ...................~~(,_,"> 14/ 38 sec ......................~~(,_,"> 15/ 37 sec .......................~~(,_,"> 16/ 36 sec ..........................~~(,_,"> 17/ 36 sec ...........................~~(,_,"> 18/ 36 sec ..............................~~(,_,"> 19/ 35 sec ...............................~~(,_,"> 20/ 35 sec ..................................~~(,_,"> 21/ 35 sec ....................................~~(,_,"> 22/ 34 sec ......................................~~(,_,"> 22/ 33 sec .......................................~~(,_,"> 23/ 32 sec ..........................................~~(,_,"> 24/ 32 sec ............................................~~(,_,"> 25/ 32 sec ..............................................~~(,_,"> 26/ 32 sec ................................................~~(,_,"> 27/ 32 sec ..................................................~~(,_,"> 28/ 32 sec ....................................................~~(,_,"> 29/ 32 sec ......................................................~~(,_,"> 30/ 32 sec ........................................................~~(,_,"> 31/ 32 sec ..........................................................~~(,_,"> 32/ 32 sec ............................................................~~(,_,"> Auto-refine: Estimated accuracy angles= 0.36 degrees; offsets= 0.3 pixels CurrentResolution= 12.4 Angstroms, which requires orientationSampling of at least 4.04494 degrees for a particle of diameter 350 Angstroms Oversampling= 0 NrHiddenVariableSamplingPoints= 2673 OrientationalSampling= 1.875 NrOrientations= 27 TranslationalSampling= 1 NrTranslations= 33 ============================= Oversampling= 1 NrHiddenVariableSamplingPoints= 171072 OrientationalSampling= 0.9375 NrOrientations= 216 TranslationalSampling= 0.5 NrTranslations= 264 ============================= Estimated memory for expectation step > 1.91847 Gb, available memory = 24 Gb. Estimated memory for maximization step > 0.206596 Gb, available memory = 24 Gb. Expectation iteration 18 of 20 000/??? sec ~~(,_,"> [oo] 0.57/24.55 min .~~(,_,"> 0.83/22.80 min ..~~(,_,"> 1.52/30.33 min ...~~(,_,"> 1.83/28.88 min ...~~(,_,"> 2.40/31.20 min ....~~(,_,"> 2.73/30.23 min .....~~(,_,"> 3.22/30.97 min ......~~(,_,"> 3.73/31.82 min .......~~(,_,"> 4.18/31.98 min .......~~(,_,"> 4.63/32.12 min ........~~(,_,"> 5.07/32.12 min .........~~(,_,"> 5.57/32.52 min ..........~~(,_,"> 6.17/33.40 min ...........~~(,_,"> 6.52/32.88 min ...........~~(,_,"> 7.02/33.17 min ............~~(,_,"> 7.40/32.88 min .............~~(,_,"> 7.92/33.18 min ..............~~(,_,"> 8.57/34.00 min ...............~~(,_,"> 8.88/33.47 min ...............~~(,_,"> 9.37/33.58 min ................~~(,_,"> 9.82/33.58 min .................~~(,_,"> 10.18/33.30 min ..................~~(,_,"> 10.68/33.45 min ...................~~(,_,"> 11.28/33.90 min ...................~~(,_,"> 11.52/33.27 min ....................~~(,_,"> 12.22/33.97 min .....................~~(,_,"> 12.50/33.50 min ......................~~(,_,"> 13.00/33.62 min .......................~~(,_,"> 13.57/33.92 min .......................~~(,_,"> 14.03/33.93 min ........................~~(,_,"> 14.40/33.72 min .........................~~(,_,"> 14.97/33.98 min ..........................~~(,_,"> 15.58/34.33 min ...........................~~(,_,"> 15.85/33.92 min ............................~~(,_,"> 16.27/33.83 min ............................~~(,_,"> 16.82/34.02 min .............................~~(,_,"> 17.20/33.87 min ..............................~~(,_,"> 17.78/34.12 min ...............................~~(,_,"> 18.20/34.03 min ................................~~(,_,"> 18.63/33.98 min ................................~~(,_,"> 19.23/34.25 min .................................~~(,_,"> 19.57/34.02 min ..................................~~(,_,"> 20.07/34.10 min ...................................~~(,_,"> 20.48/34.02 min ....................................~~(,_,"> 20.98/34.08 min ....................................~~(,_,"> 21.55/34.27 min .....................................~~(,_,"> 21.98/34.22 min ......................................~~(,_,"> 22.55/34.38 min .......................................~~(,_,"> 22.77/34.02 min ........................................~~(,_,"> 23.28/34.10 min ........................................~~(,_,"> 23.80/34.18 min .........................................~~(,_,"> 24.23/34.13 min ..........................................~~(,_,"> 24.50/33.87 min ...........................................~~(,_,"> 25.15/34.13 min ............................................~~(,_,"> 25.60/34.13 min .............................................~~(,_,"> 26.02/34.07 min .............................................~~(,_,"> 26.68/34.33 min ..............................................~~(,_,"> 26.90/34.03 min ...............................................~~(,_,"> 27.42/34.10 min ................................................~~(,_,"> 27.93/34.17 min .................................................~~(,_,"> 28.40/34.18 min .................................................~~(,_,"> 28.78/34.08 min ..................................................~~(,_,"> 29.30/34.15 min ...................................................~~(,_,"> 29.77/34.17 min ....................................................~~(,_,"> 30.28/34.23 min .....................................................~~(,_,"> 30.62/34.08 min .....................................................~~(,_,"> 31.23/34.25 min ......................................................~~(,_,"> 31.55/34.10 min .......................................................~~(,_,"> 32.12/34.22 min ........................................................~~(,_,"> 32.60/34.23 min .........................................................~~(,_,"> 33.00/34.17 min .........................................................~~(,_,"> 33.33/34.05 min ..........................................................~~(,_,"> 33.95/34.20 min ...........................................................~~(,_,"> 34.67/34.48 min ............................................................~~(,_,"> 34.67/34.67 min ............................................................~~(,_,"> Maximization ... 000/??? sec ~~(,_,"> [oo] 19/ 19 sec ............................................................~~(,_,"> Estimating accuracies in the orientational assignment ... 000/??? sec ~~(,_,"> [oo] 2/ 60 sec ..~~(,_,"> 3/ 45 sec ...~~(,_,"> 4/ 40 sec ......~~(,_,"> 5/ 37 sec .......~~(,_,"> 6/ 36 sec ..........~~(,_,"> 8/ 40 sec ...........~~(,_,"> 9/ 38 sec ..............~~(,_,"> 10/ 37 sec ...............~~(,_,"> 12/ 40 sec ..................~~(,_,"> 13/ 39 sec ...................~~(,_,"> 14/ 38 sec ......................~~(,_,"> 15/ 37 sec .......................~~(,_,"> 16/ 36 sec ..........................~~(,_,"> 17/ 36 sec ...........................~~(,_,"> 17/ 34 sec ..............................~~(,_,"> 18/ 33 sec ...............................~~(,_,"> 19/ 33 sec ..................................~~(,_,"> 20/ 33 sec ....................................~~(,_,"> 21/ 33 sec ......................................~~(,_,"> 22/ 33 sec .......................................~~(,_,"> 23/ 32 sec ..........................................~~(,_,"> 24/ 32 sec ............................................~~(,_,"> 25/ 32 sec ..............................................~~(,_,"> 26/ 32 sec ................................................~~(,_,"> 27/ 32 sec ..................................................~~(,_,"> 28/ 32 sec ....................................................~~(,_,"> 28/ 31 sec ......................................................~~(,_,"> 29/ 31 sec ........................................................~~(,_,"> 30/ 31 sec ..........................................................~~(,_,"> 31/ 31 sec ............................................................~~(,_,"> Auto-refine: Estimated accuracy angles= 0.36 degrees; offsets= 0.3 pixels CurrentResolution= 12.4 Angstroms, which requires orientationSampling of at least 4.04494 degrees for a particle of diameter 350 Angstroms Oversampling= 0 NrHiddenVariableSamplingPoints= 2673 OrientationalSampling= 1.875 NrOrientations= 27 TranslationalSampling= 1 NrTranslations= 33 ============================= Oversampling= 1 NrHiddenVariableSamplingPoints= 171072 OrientationalSampling= 0.9375 NrOrientations= 216 TranslationalSampling= 0.5 NrTranslations= 264 ============================= Estimated memory for expectation step > 1.91847 Gb, available memory = 24 Gb. Estimated memory for maximization step > 0.206596 Gb, available memory = 24 Gb. Expectation iteration 19 of 20 000/??? sec ~~(,_,"> [oo] 0.58/25.27 min .~~(,_,"> 0.77/20.97 min ..~~(,_,"> 1.52/30.33 min ...~~(,_,"> 1.77/27.83 min ...~~(,_,"> 2.45/31.85 min ....~~(,_,"> 2.57/28.38 min .....~~(,_,"> 3.23/31.13 min ......~~(,_,"> 3.83/32.67 min .......~~(,_,"> 4.08/31.22 min .......~~(,_,"> 4.60/31.88 min ........~~(,_,"> 5.12/32.43 min .........~~(,_,"> 5.70/33.30 min ..........~~(,_,"> 6.13/33.22 min ...........~~(,_,"> 6.57/33.15 min ...........~~(,_,"> 6.95/32.85 min ............~~(,_,"> 7.45/33.10 min .............~~(,_,"> 7.90/33.12 min ..............~~(,_,"> 8.57/34.00 min ...............~~(,_,"> 9.02/33.97 min ...............~~(,_,"> 9.40/33.70 min ................~~(,_,"> 9.85/33.68 min .................~~(,_,"> 10.32/33.73 min ..................~~(,_,"> 10.77/33.72 min ...................~~(,_,"> 11.20/33.65 min ...................~~(,_,"> 11.83/34.18 min ....................~~(,_,"> 12.10/33.63 min .....................~~(,_,"> 12.55/33.63 min ......................~~(,_,"> 13.12/33.93 min .......................~~(,_,"> 13.65/34.12 min .......................~~(,_,"> 13.98/33.82 min ........................~~(,_,"> 14.60/34.18 min .........................~~(,_,"> 15.07/34.20 min ..........................~~(,_,"> 15.48/34.10 min ...........................~~(,_,"> 16.00/34.23 min ............................~~(,_,"> 16.40/34.10 min ............................~~(,_,"> 16.83/34.05 min .............................~~(,_,"> 17.45/34.37 min ..............................~~(,_,"> 17.65/33.87 min ...............................~~(,_,"> 18.23/34.10 min ................................~~(,_,"> 18.68/34.08 min ................................~~(,_,"> 19.17/34.12 min .................................~~(,_,"> 19.72/34.28 min ..................................~~(,_,"> 20.03/34.03 min ...................................~~(,_,"> 20.47/34.00 min ....................................~~(,_,"> 20.92/33.98 min ....................................~~(,_,"> 21.60/34.33 min .....................................~~(,_,"> 21.90/34.08 min ......................................~~(,_,"> 22.40/34.15 min .......................................~~(,_,"> 22.88/34.18 min ........................................~~(,_,"> 23.20/33.97 min ........................................~~(,_,"> 23.78/34.15 min .........................................~~(,_,"> 24.25/34.17 min ..........................................~~(,_,"> 24.65/34.08 min ...........................................~~(,_,"> 25.22/34.23 min ............................................~~(,_,"> 25.58/34.10 min .............................................~~(,_,"> 26.12/34.20 min .............................................~~(,_,"> 26.67/34.32 min ..............................................~~(,_,"> 26.90/34.03 min ...............................................~~(,_,"> 27.48/34.18 min ................................................~~(,_,"> 28.02/34.27 min .................................................~~(,_,"> 28.45/34.23 min .................................................~~(,_,"> 28.87/34.18 min ..................................................~~(,_,"> 29.23/34.08 min ...................................................~~(,_,"> 29.77/34.17 min ....................................................~~(,_,"> 30.35/34.30 min .....................................................~~(,_,"> 30.78/34.27 min .....................................................~~(,_,"> 31.17/34.18 min ......................................................~~(,_,"> 31.67/34.23 min .......................................................~~(,_,"> 32.10/34.20 min ........................................................~~(,_,"> 32.55/34.18 min .........................................................~~(,_,"> 33.02/34.20 min .........................................................~~(,_,"> 33.48/34.20 min ..........................................................~~(,_,"> 33.98/34.23 min ...........................................................~~(,_,"> 34.73/34.55 min ............................................................~~(,_,"> 34.73/34.73 min ............................................................~~(,_,"> Maximization ... 000/??? sec ~~(,_,"> [oo] 19/ 19 sec ............................................................~~(,_,"> Estimating accuracies in the orientational assignment ... 000/??? sec ~~(,_,"> [oo] 1/ 30 sec ..~~(,_,"> 3/ 45 sec ...~~(,_,"> 4/ 40 sec ......~~(,_,"> 6/ 45 sec .......~~(,_,"> 7/ 42 sec ..........~~(,_,"> 8/ 40 sec ...........~~(,_,"> 10/ 42 sec ..............~~(,_,"> 11/ 41 sec ...............~~(,_,"> 13/ 43 sec ..................~~(,_,"> 14/ 42 sec ...................~~(,_,"> 15/ 40 sec ......................~~(,_,"> 16/ 40 sec .......................~~(,_,"> 17/ 39 sec ..........................~~(,_,"> 18/ 38 sec ...........................~~(,_,"> 19/ 38 sec ..............................~~(,_,"> 20/ 37 sec ...............................~~(,_,"> 21/ 37 sec ..................................~~(,_,"> 22/ 36 sec ....................................~~(,_,"> 23/ 36 sec ......................................~~(,_,"> 24/ 36 sec .......................................~~(,_,"> 25/ 35 sec ..........................................~~(,_,"> 26/ 35 sec ............................................~~(,_,"> 27/ 35 sec ..............................................~~(,_,"> 28/ 35 sec ................................................~~(,_,"> 29/ 34 sec ..................................................~~(,_,"> 30/ 34 sec ....................................................~~(,_,"> 31/ 34 sec ......................................................~~(,_,"> 32/ 34 sec ........................................................~~(,_,"> 33/ 34 sec ..........................................................~~(,_,"> 34/ 34 sec ............................................................~~(,_,"> Auto-refine: Estimated accuracy angles= 0.34 degrees; offsets= 0.3 pixels CurrentResolution= 11.7297 Angstroms, which requires orientationSampling of at least 3.82979 degrees for a particle of diameter 350 Angstroms Oversampling= 0 NrHiddenVariableSamplingPoints= 2673 OrientationalSampling= 1.875 NrOrientations= 27 TranslationalSampling= 1 NrTranslations= 33 ============================= Oversampling= 1 NrHiddenVariableSamplingPoints= 171072 OrientationalSampling= 0.9375 NrOrientations= 216 TranslationalSampling= 0.5 NrTranslations= 264 ============================= Estimated memory for expectation step > 2.1699 Gb, available memory = 24 Gb. Estimated memory for maximization step > 0.234839 Gb, available memory = 24 Gb. Expectation iteration 20 of 20 000/??? sec ~~(,_,"> [oo] 0.62/26.72 min .~~(,_,"> 1.02/27.82 min ..~~(,_,"> 1.53/30.67 min ...~~(,_,"> 2.07/32.55 min ...~~(,_,"> 2.70/35.10 min ....~~(,_,"> 3.23/35.77 min .....~~(,_,"> 3.83/36.90 min ......~~(,_,"> 4.20/35.80 min .......~~(,_,"> 4.85/37.08 min .......~~(,_,"> 5.05/35.00 min ........~~(,_,"> 5.85/37.08 min .........~~(,_,"> 6.25/36.52 min ..........~~(,_,"> 6.80/36.83 min ...........~~(,_,"> 7.42/37.43 min ...........~~(,_,"> 7.90/37.33 min ............~~(,_,"> 8.32/36.95 min .............~~(,_,"> 8.97/37.60 min ..............~~(,_,"> 9.60/38.10 min ...............~~(,_,"> 10.05/37.87 min ...............~~(,_,"> 10.53/37.77 min ................~~(,_,"> 11.20/38.30 min .................~~(,_,"> 11.73/38.37 min ..................~~(,_,"> 12.00/37.58 min ...................~~(,_,"> 12.72/38.22 min ...................~~(,_,"> 13.00/37.55 min ....................~~(,_,"> 13.70/38.08 min .....................~~(,_,"> 14.33/38.42 min ......................~~(,_,"> 14.77/38.20 min .......................~~(,_,"> 15.40/38.50 min .......................~~(,_,"> 15.83/38.28 min ........................~~(,_,"> 16.35/38.28 min .........................~~(,_,"> 16.97/38.52 min ..........................~~(,_,"> 17.38/38.30 min ...........................~~(,_,"> 18.07/38.65 min ............................~~(,_,"> 18.60/38.68 min ............................~~(,_,"> 19.12/38.67 min .............................~~(,_,"> 19.53/38.47 min ..............................~~(,_,"> 20.10/38.57 min ...............................~~(,_,"> 20.63/38.58 min ................................~~(,_,"> 21.15/38.58 min ................................~~(,_,"> 21.65/38.55 min .................................~~(,_,"> 22.17/38.55 min ..................................~~(,_,"> 22.83/38.80 min ...................................~~(,_,"> 23.15/38.45 min ....................................~~(,_,"> 23.80/38.67 min ....................................~~(,_,"> 24.33/38.68 min .....................................~~(,_,"> 24.77/38.55 min ......................................~~(,_,"> 25.33/38.62 min .......................................~~(,_,"> 25.85/38.62 min ........................................~~(,_,"> 26.47/38.77 min ........................................~~(,_,"> 26.90/38.63 min .........................................~~(,_,"> 27.58/38.87 min ..........................................~~(,_,"> 27.97/38.67 min ...........................................~~(,_,"> 28.57/38.78 min ............................................~~(,_,"> 28.98/38.63 min .............................................~~(,_,"> 29.67/38.85 min .............................................~~(,_,"> 30.17/38.82 min ..............................................~~(,_,"> 30.60/38.70 min ...............................................~~(,_,"> 31.20/38.80 min ................................................~~(,_,"> 31.78/38.88 min .................................................~~(,_,"> 32.22/38.77 min .................................................~~(,_,"> 32.77/38.80 min ..................................................~~(,_,"> 33.27/38.78 min ...................................................~~(,_,"> 33.87/38.87 min ....................................................~~(,_,"> 34.47/38.95 min .....................................................~~(,_,"> 34.85/38.80 min .....................................................~~(,_,"> 35.42/38.85 min ......................................................~~(,_,"> 35.92/38.82 min .......................................................~~(,_,"> 36.45/38.83 min ........................................................~~(,_,"> 36.88/38.73 min .........................................................~~(,_,"> 37.38/38.72 min .........................................................~~(,_,"> 38.05/38.87 min ..........................................................~~(,_,"> 38.53/38.82 min ...........................................................~~(,_,"> 39.45/39.23 min ............................................................~~(,_,"> 39.45/39.45 min ............................................................~~(,_,"> Maximization ... 000/??? sec ~~(,_,"> [oo] 22/ 22 sec ............................................................~~(,_,">