++++ Executing new job on Sat Apr 28 20:55:43 2018
 ++++ with the following command(s): 
`which relion_autopick_mpi` --i ./Select/job041/micrographs.star --ref ./Select/job037/class_averages.star --odir AutoPick/job042/ --pickname autopick --invert  --ctf  --ang 3 --shrink 1 --lowpass 20 --particle_diameter 222 --threshold 0.55 --min_distance 44 --max_stddev_noise -1 --helix --helical_tube_outer_diameter 120 --helical_tube_kappa_max 0.3 --helical_tube_length_min -1 --gpu "0:0:1:1:2:2:3:3" 
echo ./Select/job041/micrographs.star > AutoPick/job042/coords_suffix_autopick.star
 ++++ 

 ++++ Executing new job on Sat Apr 28 21:16:24 2018
 ++++ with the following command(s): 
`which relion_autopick_mpi` --i ./Select/job041/micrographs.star --ref ./Select/job037/class_averages.star --odir AutoPick/job042/ --pickname autopick --invert  --ctf  --ang 3 --shrink 1 --lowpass 20 --particle_diameter 222 --threshold 0.5 --min_distance 44 --max_stddev_noise -1 --helix --helical_tube_outer_diameter 120 --helical_tube_kappa_max 0.3 --helical_tube_length_min -1 --only_do_unfinished  --gpu "0:0:1:1:2:2:3:3" 
echo ./Select/job041/micrographs.star > AutoPick/job042/coords_suffix_autopick.star
 ++++