# filelist

dirname: /usr/share/javadoc/jboss-as/org/jboss/as/ejb3/deployment/processors/annotation
filetypes: dffffffffffffffffffffffffffff
filenames:
  class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/TransactionTimeoutAnnotationInformationFactory.html/TransactionManagementAnnotationInformationFactory.html/TransactionAttributeAnnotationInformationFactory.html/TimerServiceAnnotationProcessor.html/StatefulTimeoutAnnotationInformationFactory.html/SecurityDomainAnnotationInformationFactory.html/ScheduleAnnotationInformationFactory.html/RunAsPrincipalAnnotationInformationFactory.html/RunAsAnnotationInformationFactory.html/RolesAllowedAnnotationInformationFactory.html/ResourceAdaptorAnnotationInformationFactory.html/RemoveAnnotationInformationFactory.html/RemoteHomeAnnotationInformationFactory.html/PoolAnnotationInformationFactory.html/LockAnnotationInformationFactory.html/LocalHomeAnnotationInformationFactory.html/InitAnnotationInformationFactory.html/EjbAnnotationProcessor.html/DependsOnAnnotationInformationFactory.html/DeclareRolesAnnotationInformationFactory.html/ConcurrencyManagementAnnotationInformationFactory.html/ClusteredAnnotationInformationFactory.html/CacheAnnotationInformationFactory.html/AccessTimeoutAnnotationInformationFactory.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/arquillian/testenricher/msc
filetypes: dffffffffff
filenames:
  class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/ServiceTargetAssociation.html/ServiceContainerAssociation.html/MSCTestEnricher.html/MSCEnricherRemoteExtension.html/MSCEnricherExtension.html/MSCAuxiliaryArchiveAppender.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/naming/context
filetypes: dfffffff
filenames:
  class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/ObjectFactoryBuilder.html/NamespaceContextSelector.html/ModularReference.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/service/class-use
filetypes: fffffffff
filenames:
  ServiceDeploymentParsingProcessor.html/SarSubsystemProviders.html/SarSubsystemAdd.html/SarSubDeploymentProcessor.html/SarModuleDependencyProcessor.html/SarMessages.html/SarLogger.html/SarExtension.html/ParsedServiceDeploymentProcessor.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/clustering/infinispan/atomic
filetypes: dfffff
filenames:
  class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/AtomicMapCache.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/cmp/component/class-use
filetypes: fffffffffffff
filenames:
  CmpProxyFactory.html/CmpProxy.html/CmpInstanceReferenceFactory.html/CmpEntityBeanRemoteViewInstanceFactory.html/CmpEntityBeanObjectViewConfigurator.html/CmpEntityBeanInvocationHandler.html/CmpEntityBeanHomeViewConfigurator.html/CmpEntityBeanComponentInstance.html/CmpEntityBeanComponentDescription.html/CmpEntityBeanComponentCreateService.html/CmpEntityBeanComponent.html/CmpAllowedMethodsInformation.html/Cmp10AllowedMethodsInformation.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/controller/extension/class-use
filetypes: ffffffff
filenames:
  ParallelExtensionAddHandler.html/ExtensionSubsystemResourceDefinition.html/ExtensionResourceDefinition.html/ExtensionResource.html/ExtensionRemoveHandler.html/ExtensionRegistry.html/ExtensionRegistry.SubsystemInformation.html/ExtensionAddHandler.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/cmp/jdbc2/schema/class-use
filetypes: ffffffffffffffff
filenames:
  TableCache.html/Table.html/Table.View.html/Schema.html/Schema.Views.html/RelationTable.html/PartitionedTableCache.html/EntityTable.html/EntityTable.View.html/EntityTable.Row.html/EntityTable.ForeignKeyConstraint.html/EntityTable.CommitStrategy.html/Cache.html/Cache.RemoveException.html/Cache.Listener.html/Cache.CacheLoader.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/connector/deployers
filetypes: ddffffff
filenames:
  processors/class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/RaDeploymentActivator.html/DsDeploymentActivator.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/controller/client
filetypes: dddffffffffffffff
filenames:
  impl/helpers/class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/OperationMessageHandler.html/OperationBuilder.html/OperationAttachments.html/Operation.html/ModelControllerClientConfiguration.html/ModelControllerClient.html/ModelControllerClient.Factory.html/MessageSeverity.html/ControllerClientMessages.html/ControllerClientLogger.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/clustering/infinispan/invoker
filetypes: dffffffff
filenames:
  class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/RetryingCacheInvoker.html/CacheInvoker.html/CacheInvoker.Operation.html/BatchOperation.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/ejb3/component/session
filetypes: dffffffffffffffffff
filenames:
  class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/StatelessWriteReplaceInterceptor.html/StatelessSerializedProxy.html/StatelessRemoteViewInstanceFactory.html/SessionBeanSetSessionContextMethodInvocationInterceptor.html/SessionBeanObjectViewConfigurator.html/SessionBeanComponentInstance.html/SessionBeanComponentDescription.html/SessionBeanComponentDescription.SessionBeanType.html/SessionBeanComponentCreateService.html/SessionBeanComponent.html/SessionBeanAllowedMethodsInformation.html/NotBusinessMethodInterceptor.html/InvalidRemoveExceptionMethodInterceptor.html/ClusteringInfo.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/ejb3/component/stateless/class-use
filetypes: ffffffff
filenames:
  StatelessSessionComponentInstance.html/StatelessSessionComponentCreateService.html/StatelessSessionComponent.html/StatelessSessionBeanObjectViewConfigurator.html/StatelessComponentInstanceAssociatingFactory.html/StatelessComponentDescription.html/StatelessComponentCreateServiceFactory.html/StatelessAllowedMethodsInformation.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/naming
filetypes: dddddddddffffffffffffffffffffffffffffff
filenames:
  util/subsystem/service/remote/management/interfaces/deployment/context/class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/WritableServiceBasedNamingStore.html/WritableNamingStore.html/ValueManagedReferenceFactory.html/ValueManagedReferenceFactory.ValueManagedReference.html/ValueManagedReference.html/StaticManagedObject.html/ServiceReferenceObjectFactory.html/ServiceBasedNamingStore.html/ServiceAwareObjectFactory.html/RequireResolveException.html/NamingStore.html/NamingMessages.html/NamingLogger.html/NamingEventCoordinator.html/NamingContext.html/ManagedReferenceObjectFactory.html/ManagedReferenceInjector.html/ManagedReferenceFactory.html/ManagedReference.html/JndiPermission.html/JndiPermission.Action.html/InitialContextFactoryBuilder.html/InitialContextFactory.html/InitialContext.html/InMemoryNamingStore.html/ContextManagedReferenceFactory.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/messaging/jms/class-use
filetypes: ffffffffffffffffffffffffffffffffffff
filenames:
  TransactionManagerLocator.html/PooledConnectionFactoryWriteAttributeHandler.html/PooledConnectionFactoryService.html/PooledConnectionFactoryRemove.html/PooledConnectionFactoryConfigProperties.html/PooledConnectionFactoryAdd.html/JndiEntriesAttribute.html/JMSTopicService.html/JMSTopicRemove.html/JMSTopicReadAttributeHandler.html/JMSTopicControlHandler.html/JMSTopicConfigurationWriteHandler.html/JMSTopicConfigurationRuntimeHandler.html/JMSTopicAddJndiHandler.html/JMSTopicAdd.html/JMSServices.html/JMSService.html/JMSServerControlHandler.html/JMSQueueService.html/JMSQueueRemove.html/JMSQueueReadAttributeHandler.html/JMSQueueControlHandler.html/JMSQueueConfigurationWriteHandler.html/JMSQueueConfigurationRuntimeHandler.html/JMSQueueAddJndiHandler.html/JMSQueueAdd.html/ConnectionFactoryWriteAttributeHandler.html/ConnectionFactoryTypeValidator.html/ConnectionFactoryRemove.html/ConnectionFactoryReadAttributeHandler.html/ConnectionFactoryAddJndiHandler.html/ConnectionFactoryAdd.html/AbstractJMSRuntimeHandler.html/AbstractAddJndiHandler.html/AS7RecoveryRegistry.html/AS7BindingRegistry.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/security/plugins/class-use
filetypes: ffffff
filenames:
  SecurityDomainContext.html/ModuleClassLoaderLocator.html/ModuleClassLoaderLocator.CombinedClassLoader.html/JNDIBasedSecurityManagement.html/DefaultAuthenticationCacheFactory.html/AuthenticationCacheEvictionListener.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/messaging/deployment/class-use
filetypes: fffff
filenames:
  Namespace.html/MessagingXmlParsingDeploymentUnitProcessor.html/MessagingXmlInstallDeploymentUnitProcessor.html/MessagingDeploymentParser_1_0.html/MessagingAttachments.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/web/deployment/component
filetypes: dffffffffff
filenames:
  class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/WebComponentProcessor.html/WebComponentInstantiator.html/WebComponentInstance.html/WebComponentDescription.html/ManagedBeanComponentInstantiator.html/ComponentInstantiator.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/web/session/notification
filetypes: dfffffffffff
filenames:
  class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/LegacyClusteredSessionNotificationPolicy.html/IgnoreUndeployLegacyClusteredSessionNotificationPolicy.html/ClusteredSessionNotificationPolicyBase.html/ClusteredSessionNotificationPolicy.html/ClusteredSessionNotificationCause.html/ClusteredSessionNotificationCapability.html/ClusteredSessionManagementStatus.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/server/deployment/integration
filetypes: dfffff
filenames:
  class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/Seam2Processor.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/clustering/web/infinispan/class-use
filetypes: ffffffffff
filenames:
  SessionMapEntry.html/SessionKeyFactory.html/SessionKey.html/SessionAttributeStorageFactoryImpl.html/SessionAttributeStorageFactory.html/SessionAttributeStorage.html/FineSessionAttributeStorage.html/DistributedCacheManagerFactory.html/DistributedCacheManager.html/CoarseSessionAttributeStorage.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/ejb3/cache
filetypes: dddfffffffffffffffff
filenames:
  spi/impl/class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/TransactionAwareObjectFactory.html/StatefulObjectFactory.html/Removable.html/PassivationManager.html/Identifiable.html/EJBBoundCacheParser.html/EJBBoundCacheMetaData.html/Cacheable.html/CacheInfo.html/CacheFactoryService.html/CacheFactory.html/Cache.html/AffinitySupport.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/ejb3/component/pool/class-use
filetypes: fffff
filenames:
  StrictMaxPoolConfig.html/PooledInstanceInterceptor.html/PooledComponent.html/PoolConfigService.html/PoolConfig.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/ee/structure/class-use
filetypes: fffffffffffff
filenames:
  InitializeInOrderProcessor.html/GlobalModuleDependencyProcessor.html/EjbJarDeploymentProcessor.html/EarStructureProcessor.html/EarMetaDataParsingProcessor.html/EarInitializationProcessor.html/EarDependencyProcessor.html/EJBClientDescriptorParsingProcessor.html/DeploymentTypeMarker.html/DeploymentType.html/ComponentAggregationProcessor.html/Attachments.html/ApplicationClientDeploymentProcessor.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/server/deployment/scanner/api
filetypes: dfffff
filenames:
  class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/DeploymentScanner.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/ejb3/deployment/processors
filetypes: ddddddffffffffffffffffffffffffffffffff
filenames:
  security/merging/entity/dd/class-use/annotation/package-use.html/package-tree.html/package-summary.html/package-frame.html/TimerServiceJndiBindingProcessor.html/TimerServiceDeploymentProcessor.html/SessionBeanHomeProcessor.html/SessionBeanComponentDescriptionFactory.html/PassivationAnnotationParsingProcessor.html/MessageDrivenComponentDescriptionFactory.html/ImplicitLocalViewProcessor.html/IIOPJndiBindingProcessor.html/EjbResourceInjectionAnnotationProcessor.html/EjbRefProcessor.html/EjbManagementDeploymentUnitProcessor.html/EjbLookupInjectionSource.html/EjbJndiBindingsDeploymentUnitProcessor.html/EjbJarParsingDeploymentUnitProcessor.html/EjbInjectionSource.html/EjbIIOPDeploymentUnitProcessor.html/EjbDependencyDeploymentUnitProcessor.html/EjbContextJndiBindingProcessor.html/EjbClientContextSetupProcessor.html/EjbCleanUpProcessor.html/EJBComponentDescriptionFactory.html/EJBClientDescriptorMetaDataProcessor.html/DeploymentRepositoryProcessor.html/BusinessViewAnnotationProcessor.html/AroundTimeoutAnnotationParsingProcessor.html/ApplicationExceptionAnnotationProcessor.html/AnnotatedEJBComponentDescriptionDeploymentUnitProcessor.html/AbstractDeploymentUnitProcessor.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/controller/registry/class-use
filetypes: ffffffffffffffffffff
filenames:
  ResourceProvider.html/ResourceFilter.html/Resource.html/Resource.Tools.html/Resource.ResourceEntry.html/Resource.NoSuchResourceException.html/Resource.Factory.html/PlaceholderResource.html/PlaceholderResource.PlaceholderResourceEntry.html/OperationEntry.html/OperationEntry.Flag.html/OperationEntry.EntryType.html/ManagementResourceRegistration.html/ManagementResourceRegistration.Factory.html/ImmutableManagementResourceRegistration.html/DelegatingImmutableManagementResourceRegistration.html/AttributeAccess.html/AttributeAccess.Storage.html/AttributeAccess.Flag.html/AttributeAccess.AccessType.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/jpa/transaction
filetypes: dffffff
filenames:
  class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/TransactionUtil.html/JtaManagerImpl.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/osgi
filetypes: dddddffffff
filenames:
  service/parser/deployment/configadmin/class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/OSGiMessages.html/OSGiLogger.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/osgi/service
filetypes: dffffff
filenames:
  class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/FrameworkBootstrapService.html/BundleInstallProviderIntegration.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/server/services/net
filetypes: dfffffffffffffffffffffffffffffffffff
filenames:
  class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/SpecifiedInterfaceResolveHandler.html/SpecifiedInterfaceRemoveHandler.html/SpecifiedInterfaceAddHandler.html/SocketBindingService.html/SocketBindingResourceDefinition.html/SocketBindingManagerService.html/RemoteDestinationOutboundSocketBindingService.html/RemoteDestinationOutboundSocketBindingResourceDefinition.html/RemoteDestinationOutboundSocketBindingAddHandler.html/OutboundSocketBindingService.html/OutboundSocketBindingResourceDefinition.html/NetworkInterfaceService.html/NetworkInterfaceRuntimeHandler.html/LocalDestinationOutboundSocketBindingService.html/LocalDestinationOutboundSocketBindingResourceDefinition.html/LocalDestinationOutboundSocketBindingAddHandler.html/ClientMappingsHandler.html/BindingRemoveHandler.html/BindingPortHandler.html/BindingMulticastPortHandler.html/BindingMulticastAddressHandler.html/BindingMetricHandlers.html/BindingMetricHandlers.BoundPortHandler.html/BindingMetricHandlers.BoundHandler.html/BindingMetricHandlers.BoundAddressHandler.html/BindingInterfaceHandler.html/BindingGroupPortOffsetHandler.html/BindingGroupDefaultInterfaceHandler.html/BindingGroupAddHandler.html/BindingFixedPortHandler.html/BindingAddHandler.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/domain/management/security/class-use
filetypes: ffffffffffffffffffffffffffffffffffffffffffff
filenames:
  XmlAuthenticationResourceDefinition.html/WhoAmIOperation.html/UserWriteAttributeHandler.html/UserResourceDefinition.html/UserRemoveHandler.html/UserNotFoundException.html/UserLdapCallbackHandler.html/UserDomainCallbackHandler.html/UserAddHandler.html/TruststoreAuthenticationResourceDefinition.html/SubjectSupplemental.html/SubjectCallback.html/SecurityRealmService.html/SecurityRealmResourceDefinition.html/SecurityRealmRemoveHandler.html/SecurityRealmChildWriteAttributeHandler.html/SecurityRealmChildRemoveHandler.html/SecurityRealmChildAddHandler.html/SecurityRealmAddHandler.html/SecretServerIdentityResourceDefinition.html/SecretIdentityService.html/SSLServerIdentityResourceDefinition.html/SSLIdentityService.html/RealmUser.html/RealmRole.html/PropertiesSubjectSupplemental.html/PropertiesFileResourceDefinition.html/PropertiesFileLoader.html/PropertiesCallbackHandler.html/PropertiesAuthorizationResourceDefinition.html/PropertiesAuthenticationResourceDefinition.html/PasswordCredential.html/ManagementUtil.html/LdapAuthenticationResourceDefinition.html/KeystoreAttributes.html/JavaConsole.html/JaasCallbackHandler.html/JaasAuthenticationResourceDefinition.html/FileKeystoreService.html/DomainManagementPrincipal.html/DomainCallbackHandler.html/ConsoleWrapper.html/AddPropertiesUser.html/AddPropertiesUser.Interactiveness.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/web/security/class-use
filetypes: ffffffff
filenames:
  WebUtil.html/WarJaccService.html/SecurityContextAssociationValve.html/JBossWebRealmService.html/JBossWebRealm.html/JBossGenericPrincipal.html/HttpServletRequestPolicyContextHandler.html/ExtendedFormAuthenticator.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/clustering/impl/class-use
filetypes: ffffffff
filenames:
  RspFilterAdapter.html/CoreGroupCommunicationService.html/CoreGroupCommunicationService.NoHandlerForRPC.html/CoreGroupCommunicationService.GroupView.html/ClusteringImplMessages.html/ClusteringImplLogger.html/ClusterNodeImpl.html/ClusterNodeFactory.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/ejb3/cache/spi/class-use
filetypes: fffffffffffffffff
filenames:
  SerializationGroupMember.html/SerializationGroup.html/ReplicationPassivationManager.html/PersistentObjectStore.html/PassivatingBackingCache.html/Passivatable.html/GroupCompatibilityChecker.html/GroupAwareBackingCache.html/BackingCacheLifecycleListener.html/BackingCacheLifecycleListener.LifecycleState.html/BackingCacheEntryStoreSourceService.html/BackingCacheEntryStoreSource.html/BackingCacheEntryStoreConfig.html/BackingCacheEntryStore.html/BackingCacheEntryFactory.html/BackingCacheEntry.html/BackingCache.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/web/session/notification/class-use
filetypes: fffffff
filenames:
  LegacyClusteredSessionNotificationPolicy.html/IgnoreUndeployLegacyClusteredSessionNotificationPolicy.html/ClusteredSessionNotificationPolicyBase.html/ClusteredSessionNotificationPolicy.html/ClusteredSessionNotificationCause.html/ClusteredSessionNotificationCapability.html/ClusteredSessionManagementStatus.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/protocol
filetypes: ddfffffffff
filenames:
  mgmt/class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/StreamUtils.html/ProtocolMessages.html/ProtocolLogger.html/ProtocolChannelClient.html/ProtocolChannelClient.Configuration.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/protocol/mgmt/class-use
filetypes: ffffffffffffffffffffffffffffff
filenames:
  RequestProcessingException.html/ProtocolUtils.html/ProtocolUtils.ResponseWriter.html/ManagementResponseHeader.html/ManagementResponseHandler.html/ManagementRequestHeader.html/ManagementRequestHandlerFactory.html/ManagementRequestHandlerFactory.RequestHandlerChain.html/ManagementRequestHandler.html/ManagementRequestContext.html/ManagementRequestContext.AsyncTask.html/ManagementRequest.html/ManagementProtocolHeader.html/ManagementProtocol.html/ManagementPongHeader.html/ManagementPingHeader.html/ManagementMessageHandler.html/ManagementClientChannelStrategy.html/ManagementChannelReceiver.html/ManagementChannelHandler.html/ManagementChannelAssociation.html/ManagementByeByeHeader.html/ManagementBatchIdManager.html/ManagementBatchIdManager.DefaultManagementBatchIdManager.html/FlushableDataOutput.html/ActiveOperation.html/ActiveOperation.ResultHandler.html/ActiveOperation.CompletedCallback.html/AbstractMessageHandler.html/AbstractManagementRequest.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/server/deployment/client
filetypes: dfffff
filenames:
  class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/ModelControllerServerDeploymentManager.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/appclient/service
filetypes: dfffffffff
filenames:
  class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/RealmCallbackWrapper.html/LazyConnectionContextSelector.html/DefaultApplicationClientCallbackHandler.html/ApplicationClientStartService.html/ApplicationClientDeploymentService.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/jmx/model/class-use
filetypes: ffffff
filenames:
  TypeConverter.html/SecurityActions.html/NameConverter.html/ModelControllerMBeanServerPlugin.html/MBeanInfoFactory.html/Constants.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/arquillian/container
filetypes: dddfffffffffffffffffff
filenames:
  remote/managed/class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/ServerSetupObserver.html/OSGiApplicationArchiveProcessor.html/NetworkUtils.html/ManagementClientProvider.html/ManagementClient.html/MBeanServerConnectionProvider.html/MBeanProxy.html/ExceptionTransformer.html/ContainerResourceTestEnricher.html/CommonDeployableContainer.html/CommonContainerExtension.html/CommonContainerConfiguration.html/Authentication.html/Authentication.CallbackHandler.html/ArchiveDeployer.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/ejb3/component/entity/class-use
filetypes: fffffffffff
filenames:
  WrappedRemoteException.html/EntityGetHomeInterceptorFactory.html/EntityBeanRemoteViewInstanceFactory.html/EntityBeanObjectViewConfigurator.html/EntityBeanInterceptors.html/EntityBeanHomeViewConfigurator.html/EntityBeanComponentInstance.html/EntityBeanComponentDescription.html/EntityBeanComponentCreateService.html/EntityBeanComponent.html/EntityBeanAllowedMethodsInformation.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/cmp/jdbc/class-use
filetypes: fffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
  SQLUtil.html/SQLUtil.OldIndexes.html/SQLUtil.OldColumns.html/SQLExceptionProcessor.html/RelationPair.html/RelationData.html/ReadAheadCache.html/ReadAheadCache.EntityReadAheadInfo.html/QueryParameter.html/QLCompiler.html/MarshalledValue.html/Mapper.html/LockingStrategy.html/LockingStrategy.AbstractStrategy.html/JdbcStoreManagerStartService.html/JdbcStoreManagerRelationshipsService.html/JdbcStoreManagerInitService.html/JdbcStoreManagerForeignKeysService.html/JDBCUtil.html/JDBCTypeSimple.html/JDBCTypeFactory.html/JDBCTypeComplexProperty.html/JDBCTypeComplex.html/JDBCType.html/JDBCStoreManager.html/JDBCStoreEntityCommand.html/JDBCStopCommand.html/JDBCStartCommand.html/JDBCResultSetReader.html/JDBCResultSetReader.AbstractResultSetReader.html/JDBCResultSetReader.AbstractPrimitiveReader.html/JDBCRemoveEntityCommand.html/JDBCQueryManager.html/JDBCQueryCommand.html/JDBCQueryCommand.EntityProxyFactory.html/JDBCQueryCommand.EntityProxyFactory.Util.html/JDBCPostCreateEntityCommand.html/JDBCPassivateEntityCommand.html/JDBCParameterSetter.html/JDBCParameterSetter.JDBCAbstractParameterSetter.html/JDBCLoadRelationCommand.html/JDBCLoadEntityCommand.html/JDBCJBossQLQuery.html/JDBCIsModifiedCommand.html/JDBCInsertRelationsCommand.html/JDBCInsertPKCreateCommand.html/JDBCInitEntityCommand.html/JDBCInitCommand.html/JDBCIdentityColumnCreateCommand.html/JDBCFindEntityCommand.html/JDBCFindEntitiesCommand.html/JDBCFindByQuery.html/JDBCFindByPrimaryKeyQuery.html/JDBCFindAllQuery.html/JDBCEntityPersistenceStore.html/JDBCEJBQLQuery.html/JDBCEJBQLCompiler.html/JDBCDynamicQLQuery.html/JDBCDestroyCommand.html/JDBCDeleteRelationsCommand.html/JDBCDeclaredSQLQuery.html/JDBCCustomFinderQuery.html/JDBCCreateEntityCommand.html/JDBCCreateCommand.html/JDBCContext.html/JDBCCommandFactory.html/JDBCActivateEntityCommand.html/JDBCAbstractQueryCommand.html/JDBCAbstractQueryCommand.LeftJoinCMRNode.html/JDBCAbstractCreateCommand.html/EJBQLToSQL92Compiler.html/CascadeDeleteStrategy.html/CascadeDeleteStrategy.NoneCascadeDeleteStrategy.html/CascadeDeleteStrategy.DefaultCascadeDeleteStrategy.html/CascadeDeleteStrategy.BatchCascadeDeleteStrategy.html/CMPFieldStateFactory.html/ByteArrayBlob.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/jsr77/ejb
filetypes: dffffffff
filenames:
  class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/ManagementRemoteEjbComponentView.html/ManagementHomeEjbComponentView.html/ManagementEjbDeploymentInformation.html/ManagementEjbComponent.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/ejb3/tx/util
filetypes: dfffff
filenames:
  class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/StatusHelper.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/controller/operations/common
filetypes: dfffffffffffffffffffffffffffffffffffff
filenames:
  class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/XmlMarshallingHandler.html/ValidateOperationHandler.html/ValidateAddressOperationHandler.html/Util.html/SystemPropertyValueWriteAttributeHandler.html/SystemPropertyRemoveHandler.html/SystemPropertyAddHandler.html/SocketBindingRemoveHandler.html/SocketBindingGroupRemoveHandler.html/SocketBindingGroupIncludeRemoveHandler.html/SocketBindingGroupIncludeAddHandler.html/SocketBindingAddHandler.html/SnapshotTakeHandler.html/SnapshotListHandler.html/SnapshotDeleteHandler.html/SchemaLocationRemoveHandler.html/SchemaLocationAddHandler.html/ResolveExpressionHandler.html/ProcessStateAttributeHandler.html/ProcessReloadHandler.html/ProcessEnvironment.html/PathRemoveHandler.html/PathAddHandler.html/NamespaceRemoveHandler.html/NamespaceAddHandler.html/JVMRemoveHandler.html/JVMHandlers.html/JVMAddHandler.html/InterfaceRemoveHandler.html/InterfaceCriteriaWriteHandler.html/InterfaceAddHandler.html/GenericSubsystemDescribeHandler.html/AbstractSocketBindingGroupAddHandler.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/host/controller/descriptions/class-use
filetypes: ffff
filenames:
  HostServerDescription.html/HostRootDescription.html/HostDescriptionProviders.html/HostControllerResourceDescription.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/cli/operation/impl
filetypes: dfffffffffffffffffff
filenames:
  class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/ValidatingCallbackHandler.html/SingleRolloutPlanGroup.html/SimpleParsedOperationRequestHeader.html/RolloutPlanRequestHeader.html/RolloutPlanGroup.html/RolloutPlanCompleter.html/ParsedRolloutPlanHeader.html/HeadersCompleter.html/DefaultPrefixFormatter.html/DefaultOperationRequestParser.html/DefaultOperationRequestBuilder.html/DefaultOperationRequestAddress.html/DefaultOperationCandidatesProvider.html/DefaultCallbackHandler.html/ConcurrentRolloutPlanGroup.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/host/controller/descriptions
filetypes: dffffffff
filenames:
  class-use/package-use.html/package-tree.html/package-summary.html/package-frame.html/HostServerDescription.html/HostRootDescription.html/HostDescriptionProviders.html/HostControllerResourceDescription.html


dirname: /usr/share/javadoc/jboss-as/org/jboss/as/clustering/web/sso
filetypes: ddfffffffff
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  matrix_list.txt/MA0441.1.pfm/MA0440.1.pfm/MA0439.1.pfm/MA0438.1.pfm/MA0437.1.pfm/MA0436.1.pfm/MA0435.1.pfm/MA0434.1.pfm/MA0433.1.pfm/MA0432.1.pfm/MA0431.1.pfm/MA0430.1.pfm/MA0429.1.pfm/MA0428.1.pfm/MA0427.1.pfm/MA0426.1.pfm/MA0425.1.pfm/MA0424.1.pfm/MA0423.1.pfm/MA0422.1.pfm/MA0421.1.pfm/MA0420.1.pfm/MA0419.1.pfm/MA0418.1.pfm/MA0417.1.pfm/MA0416.1.pfm/MA0415.1.pfm/MA0414.1.pfm/MA0413.1.pfm/MA0412.1.pfm/MA0411.1.pfm/MA0410.1.pfm/MA0409.1.pfm/MA0408.1.pfm/MA0407.1.pfm/MA0406.1.pfm/MA0405.1.pfm/MA0404.1.pfm/MA0403.1.pfm/MA0402.1.pfm/MA0401.1.pfm/MA0400.1.pfm/MA0399.1.pfm/MA0398.1.pfm/MA0397.1.pfm/MA0396.1.pfm/MA0395.1.pfm/MA0394.1.pfm/MA0393.1.pfm/MA0392.1.pfm/MA0391.1.pfm/MA0390.1.pfm/MA0389.1.pfm/MA0388.1.pfm/MA0387.1.pfm/MA0386.1.pfm/MA0385.1.pfm/MA0384.1.pfm/MA0383.1.pfm/MA0382.1.pfm/MA0381.1.pfm/MA0380.1.pfm/MA0379.1.pfm/MA0378.1.pfm/MA0377.1.pfm/MA0376.1.pfm/MA0375.1.pfm/MA0374.1.pfm/MA0373.1.pfm/MA0372.1.pfm/MA0371.1.pfm/MA0370.1.pfm/MA0369.1.pfm/MA0368.1.pfm/MA0367.1.pfm/MA0366.1.pfm/MA0365.1.pfm/MA0364.1.pfm/MA0363.1.pfm/MA0362.1.pfm/MA0361.1.pfm/MA0360.1.pfm/MA0359.1.pfm/MA0358.1.pfm/MA0357.1.pfm/MA0356.1.pfm/MA0355.1.pfm/MA0354.1.pfm/MA0353.1.pfm/MA0352.1.pfm/MA0351.1.pfm/MA0350.1.pfm/MA0349.1.pfm/MA0348.1.pfm/MA0347.1.pfm/MA0346.1.pfm/MA0345.1.pfm/MA0344.1.pfm/MA0343.1.pfm/MA0342.1.pfm/MA0341.1.pfm/MA0340.1.pfm/MA0339.1.pfm/MA0338.1.pfm/MA0337.1.pfm/MA0336.1.pfm/MA0335.1.pfm/MA0334.1.pfm/MA0333.1.pfm/MA0332.1.pfm/MA0331.1.pfm/MA0330.1.pfm/MA0329.1.pfm/MA0328.1.pfm/MA0327.1.pfm/MA0326.1.pfm/MA0325.1.pfm/MA0324.1.pfm/MA0323.1.pfm/MA0322.1.pfm/MA0321.1.pfm/MA0320.1.pfm/MA0319.1.pfm/MA0318.1.pfm/MA0317.1.pfm/MA0316.1.pfm/MA0315.1.pfm/MA0314.1.pfm/MA0313.1.pfm/MA0312.1.pfm/MA0311.1.pfm/MA0310.1.pfm/MA0309.1.pfm/MA0308.1.pfm/MA0307.1.pfm/MA0306.1.pfm/MA0305.1.pfm/MA0304.1.pfm/MA0303.1.pfm/MA0302.1.pfm/MA0301.1.pfm/MA0300.1.pfm/MA0299.1.pfm/MA0298.1.pfm/MA0297.1.pfm/MA0296.1.pfm/MA0295.1.pfm/MA0294.1.pfm/MA0293.1.pfm/MA0292.1.pfm/MA0291.1.pfm/MA0290.1.pfm/MA0289.1.pfm/MA0288.1.pfm/MA0287.1.pfm/MA0286.1.pfm/MA0285.1.pfm/MA0284.1.pfm/MA0283.1.pfm/MA0282.1.pfm/MA0281.1.pfm/MA0280.1.pfm/MA0279.1.pfm/MA0278.1.pfm/MA0277.1.pfm/MA0276.1.pfm/MA0275.1.pfm/MA0274.1.pfm/MA0273.1.pfm/MA0272.1.pfm/MA0271.1.pfm/MA0270.1.pfm/MA0269.1.pfm/MA0268.1.pfm/MA0267.1.pfm/MA0266.1.pfm/MA0265.1.pfm

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dirname: /usr/share/ugene/data/position_weight_matrix/JASPAR/vertebrates
filenames:
  matrix_list.txt/MA0442.1.pfm/MA0259.1.pfm/MA0258.1.pfm/MA0164.1.pfm/MA0163.1.pfm/MA0162.1.pfm/MA0161.1.pfm/MA0160.1.pfm/MA0159.1.pfm/MA0158.1.pfm/MA0157.1.pfm/MA0156.1.pfm/MA0155.1.pfm/MA0154.1.pfm/MA0153.1.pfm/MA0152.1.pfm/MA0151.1.pfm/MA0150.1.pfm/MA0149.1.pfm/MA0148.1.pfm/MA0147.1.pfm/MA0146.1.pfm/MA0145.1.pfm/MA0144.1.pfm/MA0143.1.pfm/MA0142.1.pfm/MA0141.1.pfm/MA0140.1.pfm/MA0139.1.pfm/MA0138.2.pfm/MA0137.2.pfm/MA0136.1.pfm/MA0135.1.pfm/MA0133.1.pfm/MA0132.1.pfm/MA0131.1.pfm/MA0130.1.pfm/MA0125.1.pfm/MA0124.1.pfm/MA0122.1.pfm/MA0119.1.pfm/MA0117.1.pfm/MA0116.1.pfm/MA0115.1.pfm/MA0114.1.pfm/MA0113.1.pfm/MA0112.2.pfm/MA0111.1.pfm/MA0109.1.pfm/MA0108.2.pfm/MA0107.1.pfm/MA0106.1.pfm/MA0105.1.pfm/MA0104.2.pfm/MA0103.1.pfm/MA0102.2.pfm/MA0101.1.pfm/MA0100.1.pfm/MA0099.2.pfm/MA0098.1.pfm/MA0095.1.pfm/MA0093.1.pfm/MA0092.1.pfm/MA0091.1.pfm/MA0090.1.pfm/MA0089.1.pfm/MA0088.1.pfm/MA0087.1.pfm/MA0084.1.pfm/MA0083.1.pfm/MA0081.1.pfm/MA0080.2.pfm/MA0079.2.pfm/MA0078.1.pfm/MA0077.1.pfm/MA0076.1.pfm/MA0075.1.pfm/MA0074.1.pfm/MA0073.1.pfm/MA0072.1.pfm/MA0071.1.pfm/MA0070.1.pfm/MA0069.1.pfm/MA0068.1.pfm/MA0067.1.pfm/MA0066.1.pfm/MA0065.2.pfm/MA0063.1.pfm/MA0062.2.pfm/MA0061.1.pfm/MA0060.1.pfm/MA0059.1.pfm/MA0058.1.pfm/MA0057.1.pfm/MA0056.1.pfm/MA0055.1.pfm/MA0052.1.pfm/MA0051.1.pfm/MA0050.1.pfm/MA0048.1.pfm/MA0047.2.pfm/MA0046.1.pfm/MA0043.1.pfm/MA0042.1.pfm/MA0041.1.pfm/MA0040.1.pfm/MA0039.2.pfm/MA0038.1.pfm/MA0037.1.pfm/MA0036.1.pfm/MA0035.2.pfm/MA0033.1.pfm/MA0032.1.pfm/MA0031.1.pfm/MA0030.1.pfm/MA0029.1.pfm/MA0028.1.pfm/MA0027.1.pfm/MA0025.1.pfm/MA0024.1.pfm/MA0019.1.pfm/MA0018.2.pfm/MA0017.1.pfm/MA0014.1.pfm/MA0009.1.pfm/MA0007.1.pfm/MA0006.1.pfm/MA0004.1.pfm/MA0003.1.pfm/MA0002.2.pfm

filetypes:
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dirname: /usr/share/ugene/data/cmdline
filetypes: ffffffffffffffffffffffffffffff
filenames:
  sitecon-search.uwl/sitecon-build.uwl/revcompl.uwl/remote-request.uwl/query.uwl/pwm-search.uwl/pwm-build.uwl/pfm-search.uwl/pfm-build.uwl/local-blast.uwl/local-blast+.uwl/join-quality.uwl/hmm2-search.uwl/hmm2-build.uwl/generate-dna.uwl/find-sw.uwl/find-repeats.uwl/find-orfs.uwl/fetch.uwl/fetch-sequence.uwl/extract-sequence.uwl/convert-seq.uwl/convert-msa.uwl/bowtie.uwl/bowtie-build.uwl/align.uwl/align-tcoffee.uwl/align-mafft.uwl/align-kalign.uwl/align-clustalw.uwl


dirname: /usr/lib/ugene
filetypes: dffffffffffffffffffff
filenames:
  plugins/ugeneui/ugenem/ugenecl/ugene/transl_zh.qm/transl_ru.qm/transl_en.qm/transl_cs.qm/libugenedb.so/libgtest.so/libU2View.so/libU2Test.so/libU2Remote.so/libU2Private.so/libU2Lang.so/libU2Gui.so/libU2Formats.so/libU2Designer.so/libU2Core.so/libU2Algorithm.so


dirname: /usr/share/ugene/data/sitecon_models/prokaryotic
filetypes: ffffffffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
  soxS.sitecon.gz/fis_new1.sitecon.gz/TyrR.sitecon.gz/TRPR.sitecon.gz/TORR.sitecon.gz/Rob2.sitecon.gz/RcsB_2core.sitecon.gz/RcsB_1core.sitecon.gz/ROB.sitecon.gz/PurR.sitecon.gz/PHOP.sitecon.gz/PHOB.sitecon.gz/OxyR.sitecon.gz/OmpR.sitecon.gz/NarL.sitecon.gz/NTRC.sitecon.gz/NARP.sitecon.gz/NARL2.sitecon.gz/NANR.sitecon.gz/NAGC_new2.sitecon.gz/NAC.sitecon.gz/MetR1.sitecon.gz/MetJ.sitecon.gz/MODE.sitecon.gz/MLC.sitecon.gz/MELR.sitecon.gz/MARA.sitecon.gz/MALT.sitecon.gz/Lrp.sitecon.gz/LEXA.sitecon.gz/ISCR3.sitecon.gz/ISCR1.sitecon.gz/IHF.sitecon.gz/ICLR.sitecon.gz/HNS.sitecon.gz/GNTR.sitecon.gz/GLPR.sitecon.gz/GALS.sitecon.gz/GALR.sitecon.gz/Frur.sitecon.gz/Fnr.sitecon.gz/FlhDC.sitecon.gz/FadR.sitecon.gz/FUR.sitecon.gz/DnaA.sitecon.gz/DeoR.sitecon.gz/CytR.sitecon.gz/CysB.sitecon.gz/Crp.sitecon.gz/CpxR.sitecon.gz/ArgR.sitecon.gz/ArcA.sitecon.gz/AraC.sitecon.gz/AgaR.sitecon.gz


dirname: /usr/lib/ugene/plugins
filetypes: ffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
  workflow_designer.plugin/weight_matrix.plugin/umuscle.plugin/smith_waterman.plugin/sitecon.plugin/repeat_finder.plugin/remote_service.plugin/remote_blast.plugin/query_designer.plugin/ptools.plugin/psipred.plugin/primer3.plugin/phylip.plugin/orf_marker.plugin/opencl_support.plugin/libworkflow_designer.so/libweight_matrix.so/libumuscle.so/libsmith_waterman.so/libsitecon.so/librepeat_finder.so/libremote_service.so/libremote_blast.so/libquery_designer.so/libptools.so/libpsipred.so/libprimer3.so/libphylip.so/liborf_marker.so/libopencl_support.so/libkalign.so/libhmm2.so/libgor4.so/libgenome_aligner.so/libexternal_tool_support.so/libexpert_discovery.so/libenzymes.so/libdotplot.so/libdna_stat.so/libdna_graphpack.so/libdna_flexibility.so/libdna_export.so/libdbi_bam.so/libcircular_view.so/libchroma_view.so/libbiostruct3d_view.so/libball.so/libapi_tests.so/libannotator.so/kalign.plugin/hmm2.plugin/gor4.plugin/genome_aligner.plugin/external_tool_support.plugin/expert_discovery.plugin/enzymes.plugin/dotplot.plugin/dna_stat.plugin/dna_graphpack.plugin/dna_flexibility.plugin/dna_export.plugin/dbi_bam.plugin/circular_view.plugin/chroma_view.plugin/biostruct3d_view.plugin/ball.plugin/api_tests.plugin/annotator.plugin


dirname: /usr/share/ugene/data/sitecon_models/eukaryotic
filetypes: ffffffffffffffffffffffffffffffffffffffffffff
filenames:
  yy1.sitecon.gz/srf_all.sitecon.gz/setCREBzag.sitecon.gz/setCREB.sitecon.gz/p53.sitecon.gz/nfy.sitecon.gz/isre.sitecon.gz/irf.sitecon.gz/er2.sitecon.gz/cMyc_can.sitecon.gz/USF.sitecon.gz/TTF1.sitecon.gz/STAT1.sitecon.gz/STAT.sitecon.gz/SRE_can.sitecon.gz/Pu1.sitecon.gz/PPRE.sitecon.gz/Oct_all.sitecon.gz/Oct1.sitecon.gz/Nrf2.sitecon.gz/Nf_e2.sitecon.gz/NFkB_homo.sitecon.gz/NFkB_hetero.sitecon.gz/NFkB_all.sitecon.gz/NFATp.sitecon.gz/NF1.sitecon.gz/MyoD.sitecon.gz/MYOGsel3.sitecon.gz/HNF4.sitecon.gz/HNF3_4.sitecon.gz/HNF1.sitecon.gz/HMG1.sitecon.gz/Gata3.sitecon.gz/Gata2.sitecon.gz/GATA_ALL.sitecon.gz/GATA1.sitecon.gz/Eklf.sitecon.gz/EGR1.sitecon.gz/E2F1DP1sel1.sitecon.gz/E2F1.sitecon.gz/CRE.sitecon.gz/CLOCK.sitecon.gz/CEBPall.sitecon.gz/CEBP_a.sitecon.gz


dirname: /usr/share/ugene/data/back_translation/Bacteria
filetypes: ffffffffff
filenames:
  Sulfolobus_solfataricus_P2.cut/Streptomyces_coelicolor_A3(2).cut/Salmonella_typhimurium_LT2.cut/Neisseria_meningitidis.cut/Listeria_monocytogenes.cut/Helicobacter_pylori.cut/Haemophilus_influenzae.cut/Escherichia_coli.cut/Bacillus_subtilis.cut/Arthrobacter_aurescens_TC1.cut


dirname: /usr/share/ugene/data/position_weight_matrix/UniPROBE/Cell08
filenames:
  Vsx1_1728.1.pwm/Vax2_3500.1.pwm/Vax1_3499.1.pwm/Uncx4.1_2281.2.pwm/Tlx2_3498.2.pwm/Titf1_1722.2.pwm/Tgif2_3451.1.pwm/Tgif1_2342.2.pwm/Tcf2_0913.2.pwm/Tcf1_2666.2.pwm/Six6_2267.5.pwm/Six6_2267.4.pwm/Six4_2860.1.pwm/Six3_1732.2.pwm/Six2_2307.2.pwm/Six1_0935.2.pwm/Shox2_2641.2.pwm/Rhox6_4251.1.pwm/Rhox11_2205.1.pwm/Rhox11_1765.2.pwm/Rax_3443.1.pwm/Prrx2_3072.1.pwm/Prrx1_3442.1.pwm/Prop1_3949.1.pwm/Pou6f1_3733.1.pwm/Pou6f1_1731.2.pwm/Pou4f3_2791.1.pwm/Pou3f4_3773.1.pwm/Pou3f3_3235.2.pwm/Pou3f2_2824.1.pwm/Pou3f1_3819.1.pwm/Pou2f3_3986.2.pwm/Pou2f2_3748.1.pwm/Pou2f1_3081.2.pwm/Pou1f1_3818.1.pwm/Pknox2_3077.2.pwm/Pknox1_2364.2.pwm/Pitx3_3497.2.pwm/Pitx2_2274.3.pwm/Pitx1_2312.1.pwm/Phox2b_3948.1.pwm/Phox2a_3947.1.pwm/Pbx1_3203.1.pwm/Pax7_3783.1.pwm/Pax6_3838.3.pwm/Pax4_3989.2.pwm/Otx2_3441.1.pwm/Otx1_2325.1.pwm/Otp_3496.1.pwm/Og2x_3719.1.pwm/Obox6_3440.2.pwm/Obox5_3963.2.pwm/Obox5_2284.1.pwm/Obox3_3439.1.pwm/Obox2_3438.2.pwm/Obox1_3970.2.pwm/Nkx6-3_3446.1.pwm/Nkx6-1_2825.2.pwm/Nkx6-1_2825.1.pwm/Nkx3-1_2923.2.pwm/Nkx2-9_3082.1.pwm/Nkx2-6_3437.1.pwm/Nkx2-5_3436.1.pwm/Nkx2-4_3074.1.pwm/Nkx2-3_3435.1.pwm/Nkx2-2_2823.1.pwm/Nkx1-2_3214.1.pwm/Nkx1-1_3856.3.pwm/Msx3_3206.1.pwm/Msx2_3449.1.pwm/Msx1_3031.2.pwm/Mrg2_2302.1.pwm/Mrg1_2246.2.pwm/Meox1_2310.2.pwm/Meis1_2335.1.pwm/Lmx1b_3433.2.pwm/Lmx1a_2238.2.pwm/Lhx9_3492.1.pwm/Lhx8_2247.2.pwm/Lhx6_3432.1.pwm/Lhx6_2272.1.pwm/Lhx5_2279.1.pwm/Lhx4_1719.2.pwm/Lhx3_3431.1.pwm/Lhx2_0953.2.pwm/Lhx1_2240.2.pwm/Lbx2_3869.2.pwm/Isx_3445.1.pwm/Isl2_3430.1.pwm/Irx6_2623.2.pwm/Irx5_2385.1.pwm/Irx4_2242.3.pwm/Irx3_2226.1.pwm/Irx3_0920.1.pwm/Irx2_0900.3.pwm/Ipf1_3815.1.pwm/Hoxd8_2644.1.pwm/Hoxd3_1742.2.pwm/Hoxd1_3448.1.pwm/Hoxd13_2356.1.pwm/Hoxd12_3481.1.pwm/Hoxd11_3873.1.pwm/Hoxd10_2368.2.pwm/Hoxc9_2367.2.pwm/Hoxc8_3429.2.pwm/Hoxc6_3954.2.pwm/Hoxc5_2630.2.pwm/Hoxc4_3491.1.pwm/Hoxc13_3127.1.pwm/Hoxc12_3480.1.pwm/Hoxc11_3718.2.pwm/Hoxc10_2779.2.pwm/Hoxb9_3413.1.pwm/Hoxb8_3780.2.pwm/Hoxb7_3953.1.pwm/Hoxb6_3428.2.pwm/Hoxb5_3122.2.pwm/Hoxb4_2627.1.pwm/Hoxb3_1720.2.pwm/Hoxb13_3479.1.pwm/Hoxa9_2622.2.pwm/Hoxa7_3750.1.pwm/Hoxa7_2668.2.pwm/Hoxa6_1040.1.pwm/Hoxa5_3415.1.pwm/Hoxa4_3426.1.pwm/Hoxa3_2783.2.pwm/Hoxa2_3079.1.pwm/Hoxa1_3425.1.pwm/Hoxa13_3126.1.pwm/Hoxa11_2218.1.pwm/Hoxa10_2318.1.pwm/Homez_1063.2.pwm/Hmx3_3490.2.pwm/Hmx2_3424.3.pwm/Hmx1_3423.1.pwm/Hmbox1_2674.1.pwm/Hlxb9_3422.1.pwm/Hlx1_2350.1.pwm/Hdx_3845.3.pwm/Gsh2_3990.2.pwm/Gsc_2327.3.pwm/Gbx2_3110.1.pwm/Gbx1_2883.2.pwm/Evx2_2645.3.pwm/Evx1_3952.2.pwm/Esx1_3124.2.pwm/En2_0952.1.pwm/En1_3123.2.pwm/Emx2_3420.1.pwm/Duxl_1286.2.pwm/Dobox5_3493.1.pwm/Dobox4_3956.2.pwm/Dmbx1_2277.1.pwm/Dlx5_3419.2.pwm/Dlx4_3488.2.pwm/Dlx3_1030.1.pwm/Dlx2_2273.2.pwm/Dlx1_1741.2.pwm/Dbx2_3487.1.pwm/Dbx1_3486.1.pwm/Cutl1_3494.2.pwm/Cutl1_3494.1.pwm/Crx_3485.1.pwm/Cphx_3484.1.pwm/Cdx2_4272.1.pwm/Cdx1_2245.1.pwm/Cart1_1275.1.pwm/Cart1_0997.1.pwm/Bsx_3483.2.pwm/Barx2_3447.2.pwm/Barx1_2877.1.pwm/Barhl2_3868.1.pwm/Barhl1_2590.2.pwm/Bapx1_2343.1.pwm/Arx_1738.2.pwm/Alx4_1744.1.pwm/Alx3_3418.2.pwm

filetypes:
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dirname: /usr/share/ugene/data/back_translation/Mammalia
filetypes: fffff
filenames:
  mitochondrion_Sus_scrofa_(pig).cut/mitochondrion_Bos_taurus_(cow).cut/Sus_scrofa_(pig).cut/Canis_familiaris_(dog).cut/Bos_taurus_(cow).cut


dirname: /usr/share/ugene/data/back_translation/Primates
filetypes: ffff
filenames:
  mitochondrion_Pan_troglodytes_(chimpanzee).cut/mitochondrion_Homo_sapiens_(human).cut/Pan_troglodytes_(chimpanzee).cut/Homo_sapiens_(human).cut


dirname: /usr/share/ugene/data/position_weight_matrix/UniPROBE/GR09
filetypes: fffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
  Yrr1.pwm/Yrm1.pwm/Ypr196w.pwm/Ypr015c.pwm/Ypr013c.pwm/Yox1.pwm/Ynr063w.pwm/Yml081w.pwm/Yll054c.pwm/Ykl222c.pwm/Ygr067c.pwm/Yer130c.pwm/Ydr520c.pwm/Ybr239c.pwm/Yap6.pwm/Yap1.pwm/Xbp1.pwm/Usv1.pwm/Ume6.pwm/Tye7.pwm/Tec1.pwm/Tea1.pwm/Tbs1.pwm/Tbf1.pwm/Sut2.pwm/Sum1.pwm/Stp4.pwm/Stp2.pwm/Stb3.pwm/Srd1.pwm/Spt15.pwm/Smp1.pwm/Skn7.pwm/Sip4.pwm/Sfp1.pwm/Sfl1.pwm/Rtg3.pwm/Rsc30.pwm/Rsc3.pwm/Rpn4.pwm/Rph1.pwm/Rgt1.pwm/Rds2.pwm/Rds1.pwm/Rdr1.pwm/Rap1.pwm/Put3.pwm/Pho4.pwm/Pho2.pwm/Phd1.pwm/Pdr1.pwm/Pbf2.pwm/Pbf1.pwm/Oaf1.pwm/Nrg1.pwm/Nhp6b.pwm/Nhp6a.pwm/Ndt80.pwm/Mig3.pwm/Mig2.pwm/Mig1.pwm/Mga1.pwm/Met32.pwm/Mcm1.pwm/Mbp1.pwm/Matalpha2.pwm/Lys14.pwm/Leu3.pwm/Hal9.pwm/Gzf3.pwm/Gsm1.pwm/Gln3.pwm/Gcn4.pwm/Gat4.pwm/Gat3.pwm/Gat1.pwm/Gal4.pwm/Fkh2.pwm/Fkh1.pwm/Fhl1.pwm/Ecm22.pwm/Cup9.pwm/Cha4.pwm/Cep3.pwm/Cbf1.pwm/Bas1.pwm/Asg1.pwm/Aro80.pwm/Aft1.pwm


dirname: /usr/share/ugene/data/back_translation/Vertebrates
filetypes: fffff
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