# filelist

dirname: /usr/src/debug/ugene-1.11.3/src/ugeneui/_tmp/ui
filetypes: ffffffffffffff
filenames:
  ui_UserApplicationsSettingsWidget.h/ui_SequenceReadingModeSelectorDialog.h/ui_ResourceSettingsWidget.h/ui_ProjectViewWidget.h/ui_PluginViewerWidget.h/ui_NetworkSettingsWidget.h/ui_MultipleSequenceFilesReadingMode.h/ui_LogSettingsWidget.h/ui_FormatSettingsWidget.h/ui_ExportProjectDialog.h/ui_DocumentFormatSelectorDialog.h/ui_CreateNewProjectWidget.h/ui_AppSettingsDialog.h/ui_AboutDialog.h


dirname: /usr/src/debug/ugene-1.11.3/src/plugins/dna_graphpack/src
filetypes: ffffffffffffff
filenames:
  KarlinSignatureDifferenceGraph.h/KarlinSignatureDifferenceGraph.cpp/GCFramePlot.h/GCFramePlot.cpp/EntropyAlgorithm.h/EntropyAlgorithm.cpp/DeviationGraph.h/DeviationGraph.cpp/DNAGraphPackPlugin.h/DNAGraphPackPlugin.cpp/CumulativeSkew.h/CumulativeSkew.cpp/BaseContentGraph.h/BaseContentGraph.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/plugins/external_tool_support/src/bowtie
filetypes: dffffff
filenames:
  bowtie_tests/BowtieTask.h/BowtieTask.cpp/BowtieSupport.h/BowtieSupport.cpp/BowtieSettingsWidget.h/BowtieSettingsWidget.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/plugins/workflow_designer/_tmp/ui
filetypes: fffffffffff
filenames:
  ui_WorkflowSettingsWidget.h/ui_WorkflowMetaDialog.h/ui_WorkflowEditorWidget.h/ui_SchemaConfigurationDialog.h/ui_SchemaAliasesConfigurationDialog.h/ui_PortAliasesConfigurationDialog.h/ui_PaletteWidget.h/ui_ImportSchemaDialog.h/ui_ExternalProcessWorkerDialog.h/ui_CreateScriptBlockDialog.h/ui_ChooseItemDialog.h


dirname: /usr/src/debug/ugene-1.11.3/src/corelibs/U2Algorithm/src/util_msa_distance
filetypes: ffffffffffff
filenames:
  MSADistanceAlgorithmSimilarity.h/MSADistanceAlgorithmSimilarity.cpp/MSADistanceAlgorithmRegistry.h/MSADistanceAlgorithmRegistry.cpp/MSADistanceAlgorithmHammingRevCompl.h/MSADistanceAlgorithmHammingRevCompl.cpp/MSADistanceAlgorithmHamming.h/MSADistanceAlgorithmHamming.cpp/MSADistanceAlgorithm.h/MSADistanceAlgorithm.cpp/BuiltInDistanceAlgorithms.h/BuiltInDistanceAlgorithms.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/plugins/smith_waterman/_tmp/moc/release
filetypes: fffff
filenames:
  moc_SmithWatermanTests.cpp/moc_SWWorker.cpp/moc_SWQuery.cpp/moc_SWAlgorithmTask.cpp/moc_SWAlgorithmPlugin.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/plugins/external_tool_support/src/utils
filetypes: ffffffffff
filenames:
  ExternalToolValidateTask.h/ExternalToolValidateTask.cpp/ExternalToolSupportAction.h/ExternalToolSupportAction.cpp/ExportTasks.h/ExportTasks.cpp/BlastTaskSettings.h/BlastTaskSettings.cpp/BlastRunCommonDialog.h/BlastRunCommonDialog.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/corelibs/U2Algorithm/src/util_msa_consensus
filetypes: ffffffffffffffff
filenames:
  MSAConsensusUtils.h/MSAConsensusUtils.cpp/MSAConsensusAlgorithmStrict.h/MSAConsensusAlgorithmStrict.cpp/MSAConsensusAlgorithmRegistry.h/MSAConsensusAlgorithmRegistry.cpp/MSAConsensusAlgorithmLevitsky.h/MSAConsensusAlgorithmLevitsky.cpp/MSAConsensusAlgorithmDefault.h/MSAConsensusAlgorithmDefault.cpp/MSAConsensusAlgorithmClustal.h/MSAConsensusAlgorithmClustal.cpp/MSAConsensusAlgorithm.h/MSAConsensusAlgorithm.cpp/BuiltInConsensusAlgorithms.h/BuiltInConsensusAlgorithms.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/corelibs/U2Test/src/gui_tests
filetypes: ffffffff
filenames:
  GUITestService.h/GUITestService.cpp/GUITestLauncher.h/GUITestLauncher.cpp/GUITestBase.h/GUITestBase.cpp/GUITest.h/GUITest.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/plugins/weight_matrix/src
filetypes: fffffffffffffffffffffffff
filenames:
  WeightMatrixWorkers.h/WeightMatrixSearchWorker.cpp/WeightMatrixSearchTask.h/WeightMatrixSearchTask.cpp/WeightMatrixPlugin.h/WeightMatrixPlugin.cpp/WeightMatrixIOWorkers.h/WeightMatrixIOWorkers.cpp/WeightMatrixIO.h/WeightMatrixIO.cpp/WeightMatrixBuildWorker.cpp/WeightMatrixAlgorithm.h/WeightMatrixAlgorithm.cpp/WMQuery.h/WMQuery.cpp/ViewMatrixDialogController.h/ViewMatrixDialogController.cpp/SetParametersDialogController.h/SetParametersDialogController.cpp/PWMSearchDialogController.h/PWMSearchDialogController.cpp/PWMJASPARDialogController.h/PWMJASPARDialogController.cpp/PWMBuildDialogController.h/PWMBuildDialogController.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/corelibs/U2View/src/ov_sequence/find_pattern
filetypes: ffffff
filenames:
  FindPatternWidgetFactory.h/FindPatternWidgetFactory.cpp/FindPatternWidget.h/FindPatternWidget.cpp/FindPatternTask.h/FindPatternTask.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/plugins/biostruct3d_view/_tmp/ui
filetypes: ffff
filenames:
  ui_StructuralAlignmentDialog.h/ui_SettingsDialog.h/ui_SelectModelsDialog.h/ui_BioStruct3DSubsetEditor.h


dirname: /usr/src/debug/ugene-1.11.3/src/corelibs/U2Core/src/io
filetypes: fffffffffffffff
filenames:
  ZlibAdapter.h/ZlibAdapter.cpp/VirtualFileSystem.h/VirtualFileSystem.cpp/VFSAdapter.h/VFSAdapter.cpp/StringAdapter.h/StringAdapter.cpp/RingBuffer.h/LocalFileAdapter.h/LocalFileAdapter.cpp/IOAdapter.h/IOAdapter.cpp/HttpFileAdapter.h/HttpFileAdapter.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/plugins/external_tool_support/src/cap3
filetypes: ffffffff
filenames:
  CAP3Worker.h/CAP3Worker.cpp/CAP3SupportTask.h/CAP3SupportTask.cpp/CAP3SupportDialog.h/CAP3SupportDialog.cpp/CAP3Support.h/CAP3Support.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/plugins_3rdparty/hmm2/_tmp/moc/release
filetypes: ffffffffffffff
filenames:
  moc_uhmmsearch.cpp/moc_uhmmerTests.cpp/moc_uhmmbuild.cpp/moc_uHMMPlugin.cpp/moc_HMMSearchWorker.cpp/moc_HMMSearchTask.cpp/moc_HMMSearchQDActor.cpp/moc_HMMSearchDialogController.cpp/moc_HMMIOWorker.cpp/moc_HMMIO.cpp/moc_HMMCalibrateTask.cpp/moc_HMMCalibrateDialogController.cpp/moc_HMMBuildWorker.cpp/moc_HMMBuildDialogController.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/plugins/repeat_finder/_tmp/moc/release
filetypes: ffffffffffffff
filenames:
  moc_TandemQuery.cpp/moc_RepeatWorker.cpp/moc_RepeatQuery.cpp/moc_RepeatFinderTests.cpp/moc_RepeatFinderPlugin.cpp/moc_RF_SArray_TandemFinder.cpp/moc_RFTaskFactory.cpp/moc_RFSArrayWK.cpp/moc_RFSArray.cpp/moc_RFDiagonal.cpp/moc_RFBase.cpp/moc_FindTandemsDialog.cpp/moc_FindRepeatsTask.cpp/moc_FindRepeatsDialog.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/corelibs/U2Designer/_tmp/moc/release
filetypes: ffffffff
filenames:
  moc_QDScheduler.cpp/moc_NewGrouperSlotDialog.cpp/moc_MarkerEditorWidget.cpp/moc_MarkerEditor.cpp/moc_GrouperEditorWidget.cpp/moc_GrouperEditor.cpp/moc_EditMarkerGroupDialog.cpp/moc_DelegateEditors.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/corelibs/U2Core/src/selection
filetypes: ffffffffffffffff
filenames:
  TextSelection.h/SelectionUtils.h/SelectionUtils.cpp/SelectionTypes.h/SelectionTypes.cpp/SelectionModel.h/SelectionModel.cpp/LRegionsSelection.h/LRegionsSelection.cpp/GObjectSelection.h/GObjectSelection.cpp/DocumentSelection.h/DocumentSelection.cpp/DNASequenceSelection.h/AnnotationSelection.h/AnnotationSelection.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/plugins/remote_service/_tmp/moc/release
filetypes: ffffff
filenames:
  moc_RemoteTasksDialog.cpp/moc_RemoteServiceUtilTasks.cpp/moc_RemoteServiceSettingsUI.cpp/moc_RemoteServicePlugin.cpp/moc_RemoteServicePingTask.cpp/moc_RemoteServiceMachine.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/corelibs/U2Core/_tmp/moc/release
filetypes: ffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
  moc_ZlibAdapter.cpp/moc_VFSAdapter.cpp/moc_UserApplicationsSettings.cpp/moc_UnloadedObject.cpp/moc_U2SqlHelpers.cpp/moc_U2SequenceUtils.cpp/moc_U2DbiUtils.cpp/moc_U2DbiRegistry.cpp/moc_U2Bits.cpp/moc_U2AttributeUtils.cpp/moc_U2AssemblyUtils.cpp/moc_U2AnnotationUtils.cpp/moc_U1AnnotationUtils.cpp/moc_TmpDirChecker.cpp/moc_Timer.cpp/moc_TextObject.cpp/moc_TaskStarter.cpp/moc_TaskSignalMapper.cpp/moc_Task.cpp/moc_TLSTask.cpp/moc_StringAdapter.cpp/moc_StateLockableDataModel.cpp/moc_Settings.cpp/moc_ServiceModel.cpp/moc_SequenceWalkerTask.cpp/moc_SequenceUtils.cpp/moc_SelectionModel.cpp/moc_ScriptTask.cpp/moc_SaveDocumentTask.cpp/moc_SaveDocumentStreamingTask.cpp/moc_ReverseSequenceTask.cpp/moc_ResourceTracker.cpp/moc_RemoveDocumentTask.cpp/moc_RemoveAnnotationsTask.cpp/moc_ProjectModel.cpp/moc_PluginModel.cpp/moc_PhyTreeObject.cpp/moc_MultiTask.cpp/moc_ModifySequenceObjectTask.cpp/moc_MSAUtils.cpp/moc_MAlignmentObject.cpp/moc_LogCache.cpp/moc_Log.cpp/moc_LocalFileAdapter.cpp/moc_LoadRemoteDocumentTask.cpp/moc_LoadDocumentTask.cpp/moc_LRegionsSelection.cpp/moc_L10n.cpp/moc_IOAdapter.cpp/moc_HttpFileAdapter.cpp/moc_GUrlUtils.cpp/moc_GObjectSelection.cpp/moc_GObject.cpp/moc_FormatSettings.cpp/moc_FailTask.cpp/moc_ExtractAnnotatedRegionTask.cpp/moc_ExternalToolRegistry.cpp/moc_DocumentSelection.cpp/moc_DocumentProviderTask.cpp/moc_DocumentModel.cpp/moc_DocumentImport.cpp/moc_DocumentFormatConfigurators.cpp/moc_DbiDocumentFormat.cpp/moc_DataBaseRegistry.cpp/moc_DNASequenceSelection.cpp/moc_DNASequenceObject.cpp/moc_DNAChromatogramObject.cpp/moc_DNAAlphabetRegistryImpl.cpp/moc_DIProperties.cpp/moc_DBXRefRegistry.cpp/moc_CreateAnnotationTask.cpp/moc_Counter.cpp/moc_CopyDocumentTask.cpp/moc_CopyDataTask.cpp/moc_CMDLineRegistry.cpp/moc_CMDLineCoreOptions.cpp/moc_BioStruct3DObject.cpp/moc_BackgroundTaskRunner.cpp/moc_AutoAnnotationsSupport.cpp/moc_AssemblyObject.cpp/moc_AppResources.cpp/moc_AppGlobalObject.cpp/moc_AppContext.cpp/moc_AnnotationTableObject.cpp/moc_AnnotationSettings.cpp/moc_AnnotationSelection.cpp/moc_AddSequencesToAlignmentTask.cpp/moc_AddDocumentTask.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/corelibs/U2Algorithm/src/registry
filetypes: fffffffffffffffffffffffff
filenames:
  SubstMatrixRegistry.h/SubstMatrixRegistry.cpp/SplicedAlignmentTaskRegistry.h/SplicedAlignmentTaskRegistry.cpp/SplicedAlignmentTask.h/SplicedAlignmentTask.cpp/SecStructPredictTask.h/SecStructPredictTask.cpp/SecStructPredictAlgRegistry.h/SecStructPredictAlgRegistry.cpp/RepeatFinderTaskFactoryRegistry.h/RepeatFinderTaskFactoryRegistry.cpp/OpenCLGpuRegistry.h/OpenCLGpuRegistry.cpp/MSAAlignTask.h/MSAAlignTask.cpp/MSAAlignAlgRegistry.h/MSAAlignAlgRegistry.cpp/DnaAssemblyTask.h/DnaAssemblyTask.cpp/DnaAssemblyAlgRegistry.h/DnaAssemblyAlgRegistry.cpp/CudaGpuRegistry.h/CudaGpuRegistry.cpp/CDSearchTaskFactoryRegistry.h


dirname: /usr/src/debug/ugene-1.11.3/src/plugins/external_tool_support/src/blast_plus
filetypes: ffffffffffffffffffff
filenames:
  TBlastXPlusSupportTask.h/TBlastXPlusSupportTask.cpp/TBlastNPlusSupportTask.h/TBlastNPlusSupportTask.cpp/RPSBlastSupportTask.h/RPSBlastSupportTask.cpp/BlastXPlusSupportTask.h/BlastXPlusSupportTask.cpp/BlastPlusWorker.h/BlastPlusWorker.cpp/BlastPlusSupportRunDialog.h/BlastPlusSupportRunDialog.cpp/BlastPlusSupportCommonTask.h/BlastPlusSupportCommonTask.cpp/BlastPlusSupport.h/BlastPlusSupport.cpp/BlastPPlusSupportTask.h/BlastPPlusSupportTask.cpp/BlastNPlusSupportTask.h/BlastNPlusSupportTask.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/plugins/expert_discovery/src/DDisc
filetypes: fffffffffffff
filenames:
  statmath.h/definitions.h/Signal.h/Signal.cpp/Sequence.h/Sequence.cpp/MetaInfo.h/MetaInfo.cpp/Extractor.h/Extractor.cpp/Definitions.cpp/Context.h/Context.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/ugeneui/_tmp/moc/release
filetypes: fffffffffffffffffffffffffffff
filenames:
  moc_UserApplicationsSettingsGUIController.cpp/moc_TaskViewController.cpp/moc_TaskStatusBar.cpp/moc_ShutdownTask.cpp/moc_Shtirlitz.cpp/moc_ResourceSettingsGUIController.cpp/moc_ProjectViewImpl.cpp/moc_ProjectTasksGui.cpp/moc_ProjectServiceImpl.cpp/moc_ProjectLoaderImpl.cpp/moc_ProjectImpl.cpp/moc_PluginViewerImpl.cpp/moc_PluginViewerController.cpp/moc_NetworkSettingsGUIController.cpp/moc_MultipleDocumentsReadingModeSelectorController.cpp/moc_MenuManager.cpp/moc_MainWindowImpl.cpp/moc_MDIManagerImpl.cpp/moc_LogSettingsGUIController.cpp/moc_FormatSettingsGUIController.cpp/moc_ExportProjectDialogController.cpp/moc_DocumentReadingModeSelectorController.cpp/moc_DocumentFormatSelectorController.cpp/moc_DockManagerImpl.cpp/moc_CheckUpdatesTask.cpp/moc_AppSettingsGUIImpl.cpp/moc_AppSettingsDialogTree.cpp/moc_AppSettingsDialogController.cpp/moc_AboutDialogController.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/plugins/external_tool_support/_tmp/moc/release
filetypes: fffffffffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
  moc_bwaTests.cpp/moc_bowtieTests.cpp/moc_TCoffeeWorker.cpp/moc_TCoffeeSupportTask.cpp/moc_TCoffeeSupportRunDialog.cpp/moc_TCoffeeSupport.cpp/moc_TBlastXPlusSupportTask.cpp/moc_TBlastNPlusSupportTask.cpp/moc_SpideySupportTask.cpp/moc_SpideySupport.cpp/moc_RPSBlastSupportTask.cpp/moc_MrBayesTests.cpp/moc_MrBayesSupport.cpp/moc_MrBayesDialogWidget.cpp/moc_MAFFTWorker.cpp/moc_MAFFTSupportTask.cpp/moc_MAFFTSupportRunDialog.cpp/moc_MAFFTSupport.cpp/moc_FormatDBSupportTask.cpp/moc_FormatDBSupportRunDialog.cpp/moc_FormatDBSupport.cpp/moc_ExternalToolValidateTask.cpp/moc_ExternalToolSupportSettingsController.cpp/moc_ExternalToolSupportSettings.cpp/moc_ExternalToolSupportPlugin.cpp/moc_ExternalToolSupportAction.cpp/moc_ExternalToolRunTask.cpp/moc_ExportTasks.cpp/moc_ETSProjectViewItemsContoller.cpp/moc_ClustalWWorker.cpp/moc_ClustalWSupportTask.cpp/moc_ClustalWSupportRunDialog.cpp/moc_ClustalWSupport.cpp/moc_CAP3Worker.cpp/moc_CAP3SupportTask.cpp/moc_CAP3SupportDialog.cpp/moc_CAP3Support.cpp/moc_BwaTask.cpp/moc_BwaSupport.cpp/moc_BwaSettingsWidget.cpp/moc_BowtieTask.cpp/moc_BowtieSupport.cpp/moc_BowtieSettingsWidget.cpp/moc_BlastXPlusSupportTask.cpp/moc_BlastRunCommonDialog.cpp/moc_BlastPlusWorker.cpp/moc_BlastPlusSupportRunDialog.cpp/moc_BlastPlusSupportCommonTask.cpp/moc_BlastPlusSupport.cpp/moc_BlastPPlusSupportTask.cpp/moc_BlastNPlusSupportTask.cpp/moc_BlastAllWorker.cpp/moc_BlastAllSupportTask.cpp/moc_BlastAllSupportRunDialog.cpp/moc_BlastAllSupport.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/corelibs/U2Algorithm/src/smith_waterman
filetypes: fffffffffffff
filenames:
  SmithWatermanUtil.h/SmithWatermanUtil.cpp/SmithWatermanTaskFactoryRegistry.h/SmithWatermanTaskFactoryRegistry.cpp/SmithWatermanTaskFactory.h/SmithWatermanSettings.h/SmithWatermanResultFilters.h/SmithWatermanResultFilters.cpp/SmithWatermanResult.h/SmithWatermanReportCallback.h/SmithWatermanReportCallback.cpp/SWResultFilterRegistry.h/SWResultFilterRegistry.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/plugins/orf_marker/_tmp/moc/release
filetypes: ffffff
filenames:
  moc_ORFWorker.cpp/moc_ORFQuery.cpp/moc_ORFMarkerTests.cpp/moc_ORFMarkerTask.cpp/moc_ORFMarkerPlugin.cpp/moc_ORFDialog.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/plugins/biostruct3d_view/_tmp/moc/release
filetypes: ffffffff
filenames:
  moc_StructuralAlignmentDialog.cpp/moc_SettingsDialog.cpp/moc_SelectModelsDialog.cpp/moc_ExportImage3DGLDialog.cpp/moc_BioStruct3DViewPlugin.cpp/moc_BioStruct3DSubsetEditor.cpp/moc_BioStruct3DSplitter.cpp/moc_BioStruct3DGLWidget.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/ugenecl/_tmp/moc/release
filetypes: ffffffff
filenames:
  moc_TestStarter.cpp/moc_TaskStatusBar.cpp/moc_ShutdownTask.cpp/moc_LogDriver.cpp/moc_ForeverTask.cpp/moc_DumpVersionTask.cpp/moc_DumpLicenseTask.cpp/moc_DumpHelpTask.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/corelibs/U2Designer/src
filetypes: ffffffffffffffffffff
filenames:
  WorkflowGUIUtils.h/WorkflowGUIUtils.cpp/QDScheduler.h/QDScheduler.cpp/NewGrouperSlotDialog.h/NewGrouperSlotDialog.cpp/MarkerEditorWidget.h/MarkerEditorWidget.cpp/MarkerEditor.h/MarkerEditor.cpp/GrouperEditorWidget.h/GrouperEditorWidget.cpp/GrouperEditor.h/GrouperEditor.cpp/EditMarkerGroupDialog.h/EditMarkerGroupDialog.cpp/DesignerUtils.h/DesignerUtils.cpp/DelegateEditors.h/DelegateEditors.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/plugins
filetypes: dddddddddddddddddddddddd
filenames:
  workflow_designer/weight_matrix/smith_waterman/repeat_finder/remote_service/remote_blast/query_designer/orf_marker/opencl_support/genome_aligner/external_tool_support/expert_discovery/enzymes/dotplot/dna_stat/dna_graphpack/dna_flexibility/dna_export/dbi_bam/circular_view/chroma_view/biostruct3d_view/api_tests/annotator


dirname: /usr/src/debug/ugene-1.11.3/src/plugins/annotator/src
filetypes: ffffffffff
filenames:
  CollocationsSearchAlgorithm.h/CollocationsSearchAlgorithm.cpp/CollocationsDialogController.h/CollocationsDialogController.cpp/CollocationWorker.h/CollocationWorker.cpp/AnnotatorTests.h/AnnotatorTests.cpp/AnnotatorPlugin.h/AnnotatorPlugin.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/corelibs/U2Core/src/cmdline
filetypes: fffffff
filenames:
  CMDLineUtils.h/CMDLineUtils.cpp/CMDLineRegistry.h/CMDLineRegistry.cpp/CMDLineHelpProvider.h/CMDLineCoreOptions.h/CMDLineCoreOptions.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/plugins/weight_matrix/_tmp/ui
filetypes: fffff
filenames:
  ui_ViewMatrixDialog.h/ui_SetDefaultParametersDialog.h/ui_SearchJASPARDatabase.h/ui_PWMSearchDialog.h/ui_PWMBuildDialog.h


dirname: /usr/src/debug/ugene-1.11.3/src/ugeneui/src/project_view
filetypes: fffff
filenames:
  ProjectViewImpl.h/ProjectViewImpl.cpp/ProjectViewDocTree.h/ProjectViewDocTree.cpp/BuiltInObjectViews.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/plugins_3rdparty/hmm2/src
filetypes: dddddffffffff
filenames:
  u_tests/u_search/u_calibrate/u_build/hmmer2/uHMMPlugin.h/uHMMPlugin.cpp/TaskLocalStorage.h/TaskLocalStorage.cpp/HMMIOWorker.h/HMMIOWorker.cpp/HMMIO.h/HMMIO.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/corelibs/U2Private/src
filetypes: ffffffffffffffffffffff
filenames:
  TaskSchedulerImpl.h/TaskSchedulerImpl.cpp/SettingsImpl.h/SettingsImpl.cpp/ServiceRegistryImpl.h/ServiceRegistryImpl.cpp/PluginSupportImpl.h/PluginSupportImpl.cpp/PluginDescriptor.h/PluginDescriptor.cpp/LogSettings.h/LogSettings.cpp/IOAdapterRegistryImpl.h/IOAdapterRegistryImpl.cpp/DocumentFormatRegistryImpl.h/DocumentFormatRegistryImpl.cpp/CrashHandler.h/CrashHandler.cpp/AppSettingsImpl.h/AppSettingsImpl.cpp/AppContextImpl.h/AppContextImpl.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/ugeneui/src/main_window
filetypes: ffffffffffffffff
filenames:
  ToolBarManager.h/ToolBarManager.cpp/ShutdownTask.h/ShutdownTask.cpp/MenuManager.h/MenuManager.cpp/MainWindowImpl.h/MainWindowImpl.cpp/MDIManagerImpl.h/MDIManagerImpl.cpp/DockManagerImpl.h/DockManagerImpl.cpp/CheckUpdatesTask.h/CheckUpdatesTask.cpp/AboutDialogController.h/AboutDialogController.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/corelibs/U2Algorithm/src/phyltree
filetypes: fffffff
filenames:
  PhyTreeGeneratorTask.h/PhyTreeGeneratorTask.cpp/PhyTreeGeneratorRegistry.h/PhyTreeGeneratorRegistry.cpp/PhyTreeGenerator.h/CreatePhyTreeSettings.h/CreatePhyTreeSettings.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/plugins_3rdparty/primer3/_tmp/moc/release
filetypes: ffffff
filenames:
  moc_Primer3Tests.cpp/moc_Primer3Task.cpp/moc_Primer3Query.cpp/moc_Primer3Plugin.cpp/moc_Primer3Dialog.cpp/moc_FindExonRegionsTask.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/corelibs/U2Algorithm/src/misc
filetypes: ffffffffffffffffff
filenames:
  RollingMatrix.h/RollingArray.h/RepeatFinderTaskFactory.h/RepeatFinderSettings.h/FindAlgorithmTask.h/FindAlgorithmTask.cpp/FindAlgorithm.h/FindAlgorithm.cpp/EnzymeModel.h/EnzymeModel.cpp/DynTable.h/DnaAssemblyMultiTask.h/DnaAssemblyMultiTask.cpp/CDSearchTaskFactory.h/BitsTable.h/BitsTable.cpp/BinaryFindOpenCL.h/BinaryFindOpenCL.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/corelibs/U2Remote/src
filetypes: ffffffffffffffffffffffffffffffff
filenames:
  SynchHttp.h/SynchHttp.cpp/SerializeUtils.h/SerializeUtils.cpp/Serializable.h/Serializable.cpp/RemoteWorkflowRunTask.h/RemoteWorkflowRunTask.cpp/RemoteMachineTasks.h/RemoteMachineTasks.cpp/RemoteMachineSettingsDialog.h/RemoteMachineSettingsDialog.cpp/RemoteMachineScanner.h/RemoteMachineScanner.cpp/RemoteMachineScanDialogImpl.h/RemoteMachineScanDialogImpl.cpp/RemoteMachineMonitorDialogImpl.h/RemoteMachineMonitorDialogImpl.cpp/RemoteMachineMonitorDialogController.h/RemoteMachineMonitorDialogController.cpp/RemoteMachineMonitor.h/RemoteMachineMonitor.cpp/RemoteMachine.h/RemoteMachine.cpp/ProtocolUI.h/ProtocolUI.cpp/ProtocolInfo.h/ProtocolInfo.cpp/PingTask.h/PingTask.cpp/DistributedComputingUtil.h/DistributedComputingUtil.cpp


dirname: /usr/lib/debug/.build-id/fb
filetypes: ffff
filenames:
  7d5dd3af88f54c3b83537099f1d4fffc348589.debug/7d5dd3af88f54c3b83537099f1d4fffc348589/2f3d08af74773f49c0f8a2b98eb9fcd8764335.debug/2f3d08af74773f49c0f8a2b98eb9fcd8764335


dirname: /usr/src/debug/ugene-1.11.3/src/corelibs/U2Lang/_tmp/moc/release
filetypes: fffffffffffffffffffffff
filenames:
  moc_WorkflowUtils.cpp/moc_WorkflowSettings.cpp/moc_WorkflowRunTask.cpp/moc_WorkflowIOTasks.cpp/moc_SimpleWorkflowTask.cpp/moc_SchemaSerializer.cpp/moc_QueryDesignerRegistry.cpp/moc_QDScheme.cpp/moc_Port.cpp/moc_Marker.cpp/moc_MapDatatypeEditor.cpp/moc_LocalDomain.cpp/moc_IntegralBusModel.cpp/moc_IntegralBus.cpp/moc_HRSchemaSerializer.cpp/moc_ExternalToolCfg.cpp/moc_ConfigurationEditor.cpp/moc_BaseTypes.cpp/moc_BaseSlots.cpp/moc_BaseAttributes.cpp/moc_BaseActorCategories.cpp/moc_ActorPrototypeRegistry.cpp/moc_ActorModel.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/plugins/orf_marker/src
filetypes: ffffffffffff
filenames:
  ORFWorker.h/ORFWorker.cpp/ORFQuery.h/ORFQuery.cpp/ORFMarkerTests.h/ORFMarkerTests.cpp/ORFMarkerTask.h/ORFMarkerTask.cpp/ORFMarkerPlugin.h/ORFMarkerPlugin.cpp/ORFDialog.h/ORFDialog.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/plugins/remote_blast/src
filetypes: ffffffffffffffffff
filenames:
  SendSelectionDialog.h/SendSelectionDialog.cpp/RemoteBLASTWorker.h/RemoteBLASTWorker.cpp/RemoteBLASTTask.h/RemoteBLASTTask.cpp/RemoteBLASTPluginTests.h/RemoteBLASTPluginTests.cpp/RemoteBLASTPlugin.h/RemoteBLASTPlugin.cpp/RemoteBLASTConsts.h/RemoteBLASTConsts.cpp/HttpRequestCDD.cpp/HttpRequestBLAST.cpp/HttpRequest.h/DBRequestFactory.h/BlastQuery.h/BlastQuery.cpp


dirname: /usr/src/debug/ugene-1.11.3/src/corelibs/U2Test/_tmp/moc/release
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dirname: /usr/src/debug/opendnssec-1.4.0b1/signer/src/daemon
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dirname: /usr/src/debug/opendnssec-1.4.0b1/signer/src/shared
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dirname: /usr/src/debug/xorg-server-1.12.4/hw/dmx/config
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dirname: /usr/src/debug/xorg-server-1.12.4/os
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dirname: /usr/src/debug/xorg-server-1.12.4/hw/dmx/input
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filenames:
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dirname: /usr/src/debug/xorg-server-1.12.4/hw/dmx/glxProxy
filetypes: fffffffffffffffffffffffffffff
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dirname: /usr/src/debug/xorg-server-1.12.4/hw/xfree86/parser
filetypes: ffffffffffffffffffffff
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dirname: /usr/src/debug/xorg-server-1.12.4/dix
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filenames:
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dirname: /usr/src/debug/xorg-server-1.12.4/hw/kdrive/ephyr
filetypes: ffffffffffffffffffff
filenames:
  xf86dri.h/os.c/hostx.h/hostx.c/ephyrvideo.c/ephyrinit.c/ephyrhostvideo.h/ephyrhostvideo.c/ephyrhostglx.h/ephyrhostglx.c/ephyrglxext.h/ephyrglxext.c/ephyrdriext.h/ephyrdriext.c/ephyrdri.h/ephyrdri.c/ephyr_draw.c/ephyr.h/ephyr.c/XF86dri.c


dirname: /usr/src/debug/xorg-server-1.12.4/exa
filetypes: fffffffffffff
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dirname: /usr/src/debug/xorg-server-1.12.4/hw/xfree86/modes
filetypes: fffffffffffff
filenames:
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dirname: /usr/src/debug/xorg-server-1.12.4/include
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filenames:
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dirname: /usr/lib/debug/usr/bin
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filenames:
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dirname: /usr/lib/debug/usr/lib64/xorg/modules/extensions
filetypes: ffffff
filenames:
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dirname: /usr/src/debug/xorg-server-1.12.4/hw/dmx
filetypes: ddddfffffffffffffffffffffffffffffffffffffffffff
filenames:
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dirname: /usr/src/debug/xorg-server-1.12.4/hw/xfree86/ramdac
filetypes: ffffffffffffffff
filenames:
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dirname: /usr/src/debug/xorg-server-1.12.4/mi
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filenames:
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dirname: /usr/src/debug/xorg-server-1.12.4/miext/shadow
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dirname: /usr/src/debug/xorg-server-1.12.4
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filenames:
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dirname: /usr/lib/debug/usr/lib64/xorg/modules
filetypes: dfffffff
filenames:
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dirname: /usr/src/debug/xorg-server-1.12.4/glx
filetypes: ffffffffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
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dirname: /usr/src/debug/xorg-server-1.12.4/hw/xnest
filetypes: fffffffffffffffffffffffffffffffff
filenames:
  screensaver/icon/Xnest.h/XNWindow.h/XNPixmap.h/XNGC.h/XNFont.h/XNCursor.h/Window.c/Visual.h/Visual.c/Screen.h/Screen.c/Pointer.h/Pointer.c/Pixmap.c/Keyboard.h/Keyboard.c/Init.h/Init.c/Handlers.c/GCOps.c/GC.c/Font.c/Events.h/Events.c/Display.h/Display.c/Cursor.c/Color.h/Color.c/Args.h/Args.c


dirname: /usr/src/debug/xorg-server-1.12.4/Xext
filetypes: ffffffffffffffffffffffffffffffffffffff
filenames:
  xvmcext.h/xvmc.c/xvmain.c/xvdix.h/xvdisp.h/xvdisp.c/xtest.c/xselinuxint.h/xselinux_label.c/xselinux_hooks.c/xselinux_ext.c/xselinux.h/xres.c/xcmisc.c/xacestr.h/xace.h/xace.c/syncsrv.h/sync.c/sleepuntil.h/sleepuntil.c/shmint.h/shm.c/shape.c/saver.c/panoramiXsrv.h/panoramiXprocs.c/panoramiXh.h/panoramiXSwap.c/panoramiX.h/panoramiX.c/geint.h/geext.h/geext.c/dpmsstubs.c/dpmsproc.h/dpms.c/bigreq.c


dirname: /usr/src/debug/xorg-server-1.12.4/fb
filetypes: fffffffffffffffffffffffffffffffffff
filenames:
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dirname: /usr/src/debug/xorg-server-1.12.4/randr
filetypes: ffffffffffffff
filenames:
  rrxinerama.c/rrtransform.h/rrtransform.c/rrsdispatch.c/rrscreen.c/rrproperty.c/rrpointer.c/rroutput.c/rrmode.c/rrinfo.c/rrdispatch.c/rrcrtc.c/randrstr.h/randr.c


dirname: /usr/src/debug/xorg-server-1.12.4/hw/xfree86/common
filetypes: ffffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
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dirname: /usr/src/debug/xorg-server-1.12.4/hw/xfree86
filetypes: dddddddddddddddddf
filenames:
  xaa/vgahw/utils/shadowfb/ramdac/parser/os-support/modes/loader/i2c/fbdevhw/exa/dri2/dri/dixmods/ddc/common/sdksyms.c


dirname: /usr/src/debug/xorg-server-1.12.4/render
filetypes: fffffffffffffff
filenames:
  render.c/picturestr.h/picture.h/picture.c/mitri.c/mitrap.c/mirect.c/mipict.h/mipict.c/miindex.c/matrix.c/glyphstr.h/glyph.c/filter.c/animcur.c


dirname: /usr/src/debug/xorg-server-1.12.4/hw/dmx/examples
filetypes: ffffffff
filenames:
  dmxwininfo.c/dmxrmscreen.c/dmxrminput.c/dmxresize.c/dmxreconfig.c/dmxinfo.c/dmxaddscreen.c/dmxaddinput.c


dirname: /usr/src/debug/Add64-1.2.2
filetypes: fffffffffffffffffffffffffffff
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dirname: /usr/src/debug/powertop-2.1/src
filetypes: ddddddddffffffffff
filenames:
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dirname: /usr/src/debug/powertop-2.1/src/cpu
filetypes: fffffffffff
filenames:
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dirname: /usr/src/debug/powertop-2.1/src/measurement
filetypes: ffffffffff
filenames:
  sysfs.h/sysfs.cpp/power_supply.h/power_supply.cpp/measurement.h/measurement.cpp/extech.h/extech.cpp/acpi.h/acpi.cpp


dirname: /usr/src/debug/powertop-2.1/src/devices
filetypes: ffffffffffffffffffffff
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  usb.h/usb.cpp/thinkpad-light.h/thinkpad-light.cpp/thinkpad-fan.h/thinkpad-fan.cpp/runtime_pm.h/runtime_pm.cpp/rfkill.h/rfkill.cpp/network.h/network.cpp/i915-gpu.h/i915-gpu.cpp/device.h/device.cpp/backlight.h/backlight.cpp/alsa.h/alsa.cpp/ahci.h/ahci.cpp


dirname: /usr/src/debug/powertop-2.1/src/tuning
filetypes: fffffffffffffffffffff
filenames:
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dirname: /usr/src/debug/powertop-2.1/src/process
filetypes: fffffffffffff
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  work.h/work.cpp/timer.h/timer.cpp/processdevice.h/processdevice.cpp/process.h/process.cpp/powerconsumer.h/powerconsumer.cpp/interrupt.h/interrupt.cpp/do_process.cpp


dirname: /usr/src/debug/php-pecl-xdebug-2.2.1/xdebug-2.2.1
filetypes: dffffffffffffffffffffffffffffffffffff
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dirname: /usr/src/debug/php-pecl-xdebug-2.2.1/xdebug-zts
filetypes: ffffffffffffffffffffffffffffffffffff
filenames:
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dirname: /usr/lib/debug/usr/sbin
filetypes: fffffff
filenames:
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dirname: /usr/lib/debug/usr/lib64
filetypes: fffffffffffffffffffff
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dirname: /usr/lib/debug/usr/bin
filetypes: ffffffffffff
filenames:
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dirname: /usr/src/debug/gphoto2-2.4.14/gphoto2
filetypes: fffffffffffffffff
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dirname: /usr/src/debug/trousers-0.3.9/src/include
filetypes: ddfffffffffffffffffffffffffffffffffffff
filenames:
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dirname: /usr/src/debug/trousers-0.3.9/src/tspi
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dirname: /usr/src/debug/osm2pgsql
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dirname: /usr/src/debug/nmap-6.01/nbase
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dirname: /usr/src/debug/nmap-6.01/ncat
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dirname: /usr/src/debug/mined-2012.22/src/charmaps
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dirname: /usr/src/debug/kexec-tools-2.0.3/kexec
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dirname: /usr/src/debug/lightdm-1.2.3/src
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dirname: /usr/src/debug/lightdm-1.2.3/liblightdm-qt
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dirname: /usr/lib/debug/usr/lib64
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dirname: /usr/src/debug/step-4.9.5/stepcore
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dirname: /usr/src/debug/passenger-3.0.17/ext/common/Utils
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dirname: /usr/src/debug/passenger-3.0.17/ext/apache2
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[cell repeats an earlier one in this file: 114 characters]


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filetypes:
[cell repeats an earlier one in this file: 124 characters]


dirname: /usr/lib/debug/.build-id/3d
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dirname: /usr/src/debug/openvrml-0.18.9/src/node/vrml97
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dirname: /usr/src/debug/openvrml-0.18.9/src/node/x3d-geospatial
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dirname: /usr/src/debug/openvrml-0.18.9/src/node/x3d-rendering
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dirname: /usr/src/debug/openvrml-0.18.9/src/node/x3d-core
filetypes: fffffffffff
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dirname: /usr/src/debug/openvrml-0.18.9/src/node
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dirname: /usr/src/debug/globus_gss_assist-8.6
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dirname: /usr/lib/debug/usr/sbin
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dirname: /usr/src/debug/quagga-0.99.21/bgpd
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dirname: /usr/src/debug/quagga-0.99.21/ospf6d
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dirname: /usr/src/debug/quagga-0.99.21/ripngd
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dirname: /usr/src/debug/quagga-0.99.21/zebra
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dirname: /usr/src/debug/quagga-0.99.21/ospfd
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dirname: /usr/src/debug/quagga-0.99.21/ripd
filetypes: fffffffffff
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dirname: /usr/src/debug/quagga-0.99.21/lib
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dirname: /usr/src/debug/quagga-0.99.21/babeld
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dirname: /usr/src/debug/quagga-0.99.21/isisd
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dirname: /usr/lib/debug/usr/lib64/quagga
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dirname: /usr/src/debug/gnofract4d-3.14/fract4d/c
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dirname: /usr/src/debug/ufraw-0.18
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dirname: /usr/lib/debug/usr/bin
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dirname: /usr/src/debug/fetchmail-6.3.22
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dirname: /usr/src/debug/zfs-fuse-0.7.0/src/lib/libsolkerncompat/include/sys
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filenames:
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dirname: /usr/src/debug/zfs-fuse-0.7.0/src/lib/libsolkerncompat
filetypes: ddffffffffffffffffffffffffff
filenames:
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dirname: /usr/src/debug/zfs-fuse-0.7.0/src/lib/libzpool
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filenames:
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dirname: /usr/src/debug/zfs-fuse-0.7.0/src/lib/libsolcompat/include/sys
filetypes: fffffffffffffff
filenames:
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dirname: /usr/src/debug/zfs-fuse-0.7.0/src/lib/libzfscommon/include/sys
filetypes: dfffffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
  fs/zvol.h/zio_impl.h/zio_compress.h/zio_checksum.h/zio.h/zil_impl.h/zil.h/zfs_znode.h/zfs_vfsops.h/zfs_rlock.h/zfs_ioctl.h/zfs_fuid.h/zfs_dir.h/zfs_debug.h/zfs_acl.h/zap_leaf.h/zap_impl.h/zap.h/vdev_impl.h/vdev_file.h/vdev.h/unique.h/uberblock_impl.h/uberblock.h/txg_impl.h/txg.h/space_map.h/spa_impl.h/spa.h/rrwlock.h/refcount.h/metaslab_impl.h/metaslab.h/list_impl.h/list.h/dsl_synctask.h/dsl_prop.h/dsl_pool.h/dsl_dir.h/dsl_deleg.h/dsl_dataset.h/dnode.h/dmu_zfetch.h/dmu_tx.h/dmu_traverse.h/dmu_objset.h/dmu.h/ddt.h/dbuf.h/bplist.h/arc.h


dirname: /usr/src/debug/zfs-fuse-0.7.0/src/lib/libzfs
filetypes: dffffffffffff
filenames:
  include/zfs_fletcher.c/libzfs_zfsfuse.c/libzfs_util.c/libzfs_status.c/libzfs_sendrecv.c/libzfs_pool.c/libzfs_mount.c/libzfs_import.c/libzfs_graph.c/libzfs_dataset.c/libzfs_config.c/libzfs_changelist.c


dirname: /usr/src/debug/zfs-fuse-0.7.0/src/lib/libumem
filetypes: ddffffffffffffffffff
filenames:
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dirname: /usr/src/debug/zfs-fuse-0.7.0/src/zfs-fuse
filetypes: fffffffffffffffffffffff
filenames:
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dirname: /usr/src/debug/gnome-chemistry-utils-0.14.0/programs/table
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dirname: /usr/lib/debug/usr/lib64/gchemutils/0.14/plugins/paint
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filenames:
  text.so.debug/templates.so.debug/selection.so.debug/residues.so.debug/cycles.so.debug/bonds.so.debug/atoms.so.debug/arrows.so.debug


dirname: /usr/src/debug/gnome-chemistry-utils-0.14.0/programs/crystal
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dirname: /usr/src/debug/gnome-chemistry-utils-0.14.0/plugins/paint/arrows
filetypes: fffffffffffff
filenames:
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dirname: /usr/lib/debug/usr/lib64
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dirname: /usr/lib/debug/usr/bin
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dirname: /usr/src/debug/gnome-chemistry-utils-0.14.0/libs/gcr
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dirname: /usr/src/debug/gnome-chemistry-utils-0.14.0/plugins/paint/selection
filetypes: fffffffffffffff
filenames:
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dirname: /usr/src/debug/gnome-chemistry-utils-0.14.0/libs/gcu
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filenames:
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dirname: /usr/src/debug/gnome-chemistry-utils-0.14.0/libs/gcp
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dirname: /usr/src/debug/liblouis-2.4.1/liblouis
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dirname: /usr/src/debug/contour-0.3/ppc64-redhat-linux-gnu/plasma/dataengines/recommendations
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dirname: /usr/src/debug/contour-0.3/plasma/dataengines/recommendations
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dirname: /usr/src/debug/contour-0.3/contourd/recommendation
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dirname: /usr/src/debug/contour-0.3/contourd/location/network-engines/connman
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dirname: /usr/src/debug/contour-0.3/ppc64-redhat-linux-gnu/contourd/recommendation/plugins/documents
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dirname: /usr/src/debug/contour-0.3/ppc64-redhat-linux-gnu/contourd
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dirname: /usr/src/debug/validns-0.6
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dirname: /usr/src/debug/banshee-2.4.1/libbanshee
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dirname: /usr/src/debug/libwbxml-0.11.2/src
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dirname: /usr/lib/debug/.build-id/ca
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filetypes: ffffffffffffff
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filenames:
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