class Pmesh4Reader extends PolygonFileReader
| Modifier and Type | Field and Description |
|---|---|
private int |
color |
private int |
iToken |
private int |
nPolygons |
private int |
nX |
private int |
nY |
private java.lang.String |
pmeshError |
private java.lang.String[] |
tokens |
(package private) float |
transparency |
private java.lang.String |
type |
nTriangles, nVerticesallowSigma, ANGSTROMS_PER_BOHR, anisotropy, center, cJvxlEdgeNaN, colorFractionBase, colorFractionRange, contourVertexCount, dataMax, dataMean, dataMin, defaultCutoff, defaultMappedDataMax, defaultMappedDataMin, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, edgeFractionBase, edgeFractionRange, fractionData, hasColorData, haveSurfaceAtoms, isAnisotropic, isEccentric, isJvxl, isPeriodic, isProgressive, isQuiet, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorDensity, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, jvxlVoxelBitSet, marchingCubes, marchingSquares, meshData, meshDataServer, minMax, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, qpc, sg, vertexDataOnly, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData, xyzMax, xyzMin, yzCount, yzPlanes| Constructor and Description |
|---|
Pmesh4Reader() |
| Modifier and Type | Method and Description |
|---|---|
private void |
createMesh() |
private float |
getFloat() |
private int |
getInt() |
(package private) void |
getSurfaceData() |
(package private) void |
init2(SurfaceGenerator sg,
java.io.BufferedReader br) |
private java.lang.String |
nextToken() |
private void |
readColor() |
private boolean |
readVertices() |
private boolean |
readVerticesAndPolygons() |
init2PFR, readSurfaceData, readVolumeData, readVolumeParameterscloseReader, closeReaderSFR, discardTempData, getQuotedStringNext, getTokens, init, init2SFR, newBinaryDocument, parseFloat, parseFloatArray, parseFloatArrayStr, parseFloatRange, parseFloatStr, parseInt, parseIntNext, parseIntStr, rd, setOutputChannel, setStream, skipToaddTriangleCheck, addVC, addVertexCopy, applyColorScale, colorIsosurface, createIsosurface, discardTempDataSR, excludeMaximumSet, excludeMinimumSet, finalizeMapping, getColorPhaseIndex, getMinMaxMappedValues, getPlane, getPlaneSR, getSPF, getSurfaceAtomIndex, getSurfacePointAndFraction, getSurfacePointIndexAndFraction, getValue, getValue2, getValueAtPoint, gotoAndReadVoxelData, gotoData, initializeMapping, initializeVolumetricData, initPlanes, initSR, jvxlUpdateInfo, newVoxelDataCube, postProcessVertices, readAndSetVolumeParameters, readColorData, resetIsosurface, selectPocket, setBBox, setVectorAnisotropy, setVertexAnisotropy, setVolumeDataV, setVolumetricAnisotropy, setVolumetricOriginAnisotropy, slabIsosurface, updateSurfaceData, updateTrianglesprivate int nPolygons
private java.lang.String pmeshError
private java.lang.String type
private int color
float transparency
private int nX
private int nY
private java.lang.String[] tokens
private int iToken
void init2(SurfaceGenerator sg, java.io.BufferedReader br)
init2 in class SurfaceFileReadervoid getSurfaceData()
throws java.lang.Exception
getSurfaceData in class PolygonFileReaderjava.lang.Exceptionprivate boolean readVerticesAndPolygons()
private void readColor()
throws java.lang.Exception
java.lang.Exceptionprivate boolean readVertices()
throws java.lang.Exception
java.lang.Exceptionprivate void createMesh()
private java.lang.String nextToken()
throws java.lang.Exception
java.lang.Exceptionprivate int getInt()
throws java.lang.Exception
java.lang.Exceptionprivate float getFloat()
throws java.lang.Exception
java.lang.Exception