class IsoIntersectAtomReader extends AtomDataReader
| Modifier and Type | Field and Description |
|---|---|
private javajs.util.BS[][] |
bsAtomMinMax |
private java.lang.Object[] |
func |
private int |
funcType |
private javajs.util.BS |
myBsA |
private javajs.util.BS |
myBsB |
private float[] |
thisPlaneB |
private static int |
TYPE_DIFF |
private static int |
TYPE_DIFF_PAIR |
private static int |
TYPE_FUNCTION |
private static int |
TYPE_MAX |
private static int |
TYPE_SUM |
private float[] |
values |
ac, atomData, atomIndex, atomNo, atomProp, atomRadius, atomXyzTruncated, bsMyIgnored, bsMySelected, bsNearby, bsSurfaceVoxels, contactPair, doAddHydrogens, doUseIterator, fileDotModel, fileName, firstNearbyAtom, haveOneProperty, havePlane, margin, maxDistance, maxRS, modelIndex, myAtomCount, myIndex, nearbyAtomCount, noFaceSpheres, pt0, pt1, ptV, ptY0, ptZ0, rs, rs2, sr, theProperty, thisAtomSet, thisPlane, thisX, validSpheres, vl0, vl1, vl2, voxelSourceallowMapData, dataType, maxGrid, point, precalculateVoxelData, ptsPerAngstrom, useOriginStepsPointsallowSigma, ANGSTROMS_PER_BOHR, anisotropy, center, cJvxlEdgeNaN, colorFractionBase, colorFractionRange, contourVertexCount, dataMax, dataMean, dataMin, defaultCutoff, defaultMappedDataMax, defaultMappedDataMin, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, edgeFractionBase, edgeFractionRange, fractionData, hasColorData, haveSurfaceAtoms, isAnisotropic, isEccentric, isJvxl, isPeriodic, isProgressive, isQuiet, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorDensity, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, jvxlVoxelBitSet, marchingCubes, marchingSquares, meshData, meshDataServer, minMax, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, qpc, sg, vertexDataOnly, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData, xyzMax, xyzMin, yzCount, yzPlanes| Constructor and Description |
|---|
IsoIntersectAtomReader() |
| Modifier and Type | Method and Description |
|---|---|
float[] |
getPlane(int x) |
private float |
getValueAB(float va,
float vb) |
float |
getValueAtPoint(javajs.util.T3 pt,
boolean getSource) |
private float |
getValueAtPoint2(javajs.util.T3 pt,
javajs.util.BS bs) |
(package private) void |
init(SurfaceGenerator sg)
implemented in SurfaceFileReader and
|
protected boolean |
readVolumeParameters(boolean isMapData) |
protected void |
setup(boolean isMapData) |
private boolean |
setVoxels() |
getAtomMinMax, getAtoms, initADR, markPlaneVoxels, markSphereVoxels, resetPlane, resetVoxelData, setGridLimitsForAtom, setHeader, setRadii, setRanges, setup2, setVertexSource, setVolumeData, setVolumeDataADR, setVolumeForPlane, setVoxel, unsetVoxelData, unsetVoxelData2closeReader, generateCube, initVDR, readSurfaceData, readSurfaceDataVDR, readVolumeData, readVoxelDataIndividually, setVolumeDataParams, setVoxelRange, showGridInfoaddTriangleCheck, addVC, addVertexCopy, applyColorScale, colorIsosurface, createIsosurface, discardTempData, discardTempDataSR, excludeMaximumSet, excludeMinimumSet, finalizeMapping, getColorPhaseIndex, getMinMaxMappedValues, getPlaneSR, getSPF, getSurfaceAtomIndex, getSurfacePointAndFraction, getSurfacePointIndexAndFraction, getValue, getValue2, gotoAndReadVoxelData, gotoData, initializeMapping, initializeVolumetricData, initPlanes, initSR, jvxlUpdateInfo, newVoxelDataCube, postProcessVertices, readAndSetVolumeParameters, readColorData, resetIsosurface, selectPocket, setBBox, setOutputChannel, setVectorAnisotropy, setVertexAnisotropy, setVolumeDataV, setVolumetricAnisotropy, setVolumetricOriginAnisotropy, slabIsosurface, updateSurfaceData, updateTrianglesprivate static final int TYPE_FUNCTION
private static final int TYPE_SUM
private static final int TYPE_DIFF
private static final int TYPE_MAX
private static final int TYPE_DIFF_PAIR
private final javajs.util.BS myBsA
private final javajs.util.BS myBsB
private javajs.util.BS[][] bsAtomMinMax
private java.lang.Object[] func
private int funcType
private float[] thisPlaneB
private final float[] values
void init(SurfaceGenerator sg)
SurfaceReaderinit in class VolumeDataReaderprotected boolean readVolumeParameters(boolean isMapData)
readVolumeParameters in class VolumeDataReaderprotected void setup(boolean isMapData)
setup in class AtomDataReaderpublic float[] getPlane(int x)
getPlane in interface VertexDataServergetPlane in class SurfaceReaderprivate boolean setVoxels()
private float getValueAB(float va,
float vb)
public float getValueAtPoint(javajs.util.T3 pt,
boolean getSource)
getValueAtPoint in class SurfaceReadergetSource - TODOprivate float getValueAtPoint2(javajs.util.T3 pt,
javajs.util.BS bs)