class Ras3DReader extends PolygonFileReader
| Modifier and Type | Field and Description |
|---|---|
private boolean |
asQuads |
(package private) java.util.Map<java.lang.String,java.lang.Integer> |
htVertices |
private int |
nPolygons |
private java.lang.String |
pmeshError |
private java.lang.String |
type |
nTriangles, nVerticesallowSigma, ANGSTROMS_PER_BOHR, anisotropy, center, cJvxlEdgeNaN, colorFractionBase, colorFractionRange, contourVertexCount, dataMax, dataMean, dataMin, defaultCutoff, defaultMappedDataMax, defaultMappedDataMin, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, edgeFractionBase, edgeFractionRange, fractionData, hasColorData, haveSurfaceAtoms, isAnisotropic, isEccentric, isJvxl, isPeriodic, isProgressive, isQuiet, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorDensity, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, jvxlVoxelBitSet, marchingCubes, marchingSquares, meshData, meshDataServer, minMax, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, qpc, sg, vertexDataOnly, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData, xyzMax, xyzMin, yzCount, yzPlanes| Constructor and Description |
|---|
Ras3DReader() |
| Modifier and Type | Method and Description |
|---|---|
private int |
getPoint(java.lang.String[] tokens,
int i) |
(package private) void |
getSurfaceData() |
(package private) void |
init2(SurfaceGenerator sg,
java.io.BufferedReader br) |
protected void |
init2PR(SurfaceGenerator sg,
java.io.BufferedReader br) |
private boolean |
readVertices() |
protected boolean |
readVerticesAndPolygons() |
protected void |
setHeader() |
init2PFR, readSurfaceData, readVolumeData, readVolumeParameterscloseReader, closeReaderSFR, discardTempData, getQuotedStringNext, getTokens, init, init2SFR, newBinaryDocument, parseFloat, parseFloatArray, parseFloatArrayStr, parseFloatRange, parseFloatStr, parseInt, parseIntNext, parseIntStr, rd, setOutputChannel, setStream, skipToaddTriangleCheck, addVC, addVertexCopy, applyColorScale, colorIsosurface, createIsosurface, discardTempDataSR, excludeMaximumSet, excludeMinimumSet, finalizeMapping, getColorPhaseIndex, getMinMaxMappedValues, getPlane, getPlaneSR, getSPF, getSurfaceAtomIndex, getSurfacePointAndFraction, getSurfacePointIndexAndFraction, getValue, getValue2, getValueAtPoint, gotoAndReadVoxelData, gotoData, initializeMapping, initializeVolumetricData, initPlanes, initSR, jvxlUpdateInfo, newVoxelDataCube, postProcessVertices, readAndSetVolumeParameters, readColorData, resetIsosurface, selectPocket, setBBox, setVectorAnisotropy, setVertexAnisotropy, setVolumeDataV, setVolumetricAnisotropy, setVolumetricOriginAnisotropy, slabIsosurface, updateSurfaceData, updateTrianglesprivate java.lang.String pmeshError
private java.lang.String type
private boolean asQuads
private int nPolygons
java.util.Map<java.lang.String,java.lang.Integer> htVertices
void init2(SurfaceGenerator sg, java.io.BufferedReader br)
init2 in class SurfaceFileReaderprotected void init2PR(SurfaceGenerator sg, java.io.BufferedReader br)
protected void setHeader()
void getSurfaceData()
throws java.lang.Exception
getSurfaceData in class PolygonFileReaderjava.lang.Exceptionprotected boolean readVerticesAndPolygons()
private boolean readVertices()
throws java.lang.Exception
java.lang.Exceptionprivate int getPoint(java.lang.String[] tokens,
int i)