class KinemageReader extends PmeshReader
| Modifier and Type | Field and Description |
|---|---|
private java.lang.String |
findString |
private java.lang.String |
lastAtom |
private int |
nDots |
private static int |
POINTS_ALL |
private static int |
POINTS_HETS |
private static int |
POINTS_MCMC |
private static int |
POINTS_MCSC |
private static int |
POINTS_SCSC |
private int |
pointType |
private float |
vMax |
private float |
vMin |
fixedCount, isClosedFace, iToken, nPolygons, onePerLine, pmeshError, tokens, type, vertexBase, vertexMapnTriangles, nVerticesallowSigma, ANGSTROMS_PER_BOHR, anisotropy, center, cJvxlEdgeNaN, colorFractionBase, colorFractionRange, contourVertexCount, dataMax, dataMean, dataMin, defaultCutoff, defaultMappedDataMax, defaultMappedDataMin, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, edgeFractionBase, edgeFractionRange, fractionData, hasColorData, haveSurfaceAtoms, isAnisotropic, isEccentric, isJvxl, isPeriodic, isProgressive, isQuiet, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorDensity, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, jvxlVoxelBitSet, marchingCubes, marchingSquares, meshData, meshDataServer, minMax, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, qpc, sg, vertexDataOnly, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData, xyzMax, xyzMin, yzCount, yzPlanes| Constructor and Description |
|---|
KinemageReader() |
| Modifier and Type | Method and Description |
|---|---|
private float |
assignValueFromGapColorForKin(java.lang.String color)
C++ code gives these as " value > x.x ? "xxxxx", etc.
|
private int |
getColor(java.lang.String color) |
private int |
getPoint(java.lang.String line,
int i,
int[] retColor,
boolean checkType) |
(package private) void |
init2(SurfaceGenerator sg,
java.io.BufferedReader br) |
private void |
readDots() |
protected boolean |
readPolygons() |
private void |
readVectors() |
protected boolean |
readVertices() |
protected boolean |
readVolumeParameters(boolean isMapData) |
checkBinary, getSurfaceData, init2PR, readBinaryHeader, readPolygonsPM, readVerticesAndPolygons, readVerticesPM, setHeaderinit2PFR, readSurfaceData, readVolumeDatacloseReader, closeReaderSFR, discardTempData, getQuotedStringNext, getTokens, init, init2SFR, newBinaryDocument, parseFloat, parseFloatArray, parseFloatArrayStr, parseFloatRange, parseFloatStr, parseInt, parseIntNext, parseIntStr, rd, setOutputChannel, setStream, skipToaddTriangleCheck, addVC, addVertexCopy, applyColorScale, colorIsosurface, createIsosurface, discardTempDataSR, excludeMaximumSet, excludeMinimumSet, finalizeMapping, getColorPhaseIndex, getMinMaxMappedValues, getPlane, getPlaneSR, getSPF, getSurfaceAtomIndex, getSurfacePointAndFraction, getSurfacePointIndexAndFraction, getValue, getValue2, getValueAtPoint, gotoAndReadVoxelData, gotoData, initializeMapping, initializeVolumetricData, initPlanes, initSR, jvxlUpdateInfo, newVoxelDataCube, postProcessVertices, readAndSetVolumeParameters, readColorData, resetIsosurface, selectPocket, setBBox, setVectorAnisotropy, setVertexAnisotropy, setVolumeDataV, setVolumetricAnisotropy, setVolumetricOriginAnisotropy, slabIsosurface, updateSurfaceData, updateTrianglesprivate static final int POINTS_ALL
private static final int POINTS_MCMC
private static final int POINTS_SCSC
private static final int POINTS_MCSC
private static final int POINTS_HETS
private int nDots
private float vMin
private float vMax
private int pointType
private java.lang.String findString
private java.lang.String lastAtom
void init2(SurfaceGenerator sg, java.io.BufferedReader br)
init2 in class PmeshReaderprotected boolean readVolumeParameters(boolean isMapData)
readVolumeParameters in class PolygonFileReaderprotected boolean readVertices()
throws java.lang.Exception
readVertices in class PmeshReaderjava.lang.Exceptionprivate void readDots()
throws java.lang.Exception
java.lang.Exceptionprivate void readVectors()
throws java.lang.Exception
java.lang.Exceptionprivate int getPoint(java.lang.String line,
int i,
int[] retColor,
boolean checkType)
private int getColor(java.lang.String color)
private float assignValueFromGapColorForKin(java.lang.String color)
color - protected boolean readPolygons()
readPolygons in class PmeshReader